Construct: ORF ccsbBroadEn_09302
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000526.1_s300c1, BRDN0000398609
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF486 (90649)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 90649 | ZNF486 | zinc finger protein 486 | NM_052852.4 | 99.9% | 99.7% | 413G>A |
| 2 | human | 440515 | ZNF506 | zinc finger protein 506 | NM_001099269.3 | 79.5% | 69.4% | (many diffs) |
| 3 | human | 56242 | ZNF253 | zinc finger protein 253 | NM_021047.3 | 77% | 65.4% | (many diffs) |
| 4 | human | 440515 | ZNF506 | zinc finger protein 506 | NM_001145404.2 | 73.4% | 63.4% | (many diffs) |
| 5 | human | 199777 | ZNF626 | zinc finger protein 626 | NM_001076675.3 | 73.1% | 62.3% | (many diffs) |
| 6 | human | 100129842 | ZNF737 | zinc finger protein 737 | NM_001159293.2 | 72.4% | 63.3% | (many diffs) |
| 7 | human | 100129842 | ZNF737 | zinc finger protein 737 | XM_006722597.4 | 70.6% | 61.7% | (many diffs) |
| 8 | human | 100129842 | ZNF737 | zinc finger protein 737 | XM_011527599.3 | 70.6% | 61.7% | (many diffs) |
| 9 | human | 100129842 | ZNF737 | zinc finger protein 737 | XM_005259697.4 | 70.5% | 61.6% | (many diffs) |
| 10 | human | 100129842 | ZNF737 | zinc finger protein 737 | XM_011527598.3 | 70.5% | 61.6% | (many diffs) |
| 11 | human | 10793 | ZNF273 | zinc finger protein 273 | NM_021148.2 | 68.9% | 57.6% | (many diffs) |
| 12 | human | 7617 | ZNF66 | zinc finger protein 66 | NM_001355197.2 | 67.6% | 58.4% | (many diffs) |
| 13 | human | 100129842 | ZNF737 | zinc finger protein 737 | XM_017026116.1 | 67.1% | 58.3% | (many diffs) |
| 14 | human | 7643 | ZNF90 | zinc finger protein 90 | NM_007138.2 | 66.1% | 56.2% | (many diffs) |
| 15 | human | 171392 | ZNF675 | zinc finger protein 675 | NM_138330.3 | 65.9% | 56% | (many diffs) |
| 16 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446635.1 | 65.4% | 54.6% | (many diffs) |
| 17 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446636.1 | 65.4% | 54.6% | (many diffs) |
| 18 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446637.1 | 65.4% | 54.6% | (many diffs) |
| 19 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446638.1 | 65.4% | 54.6% | (many diffs) |
| 20 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446639.1 | 65.4% | 54.6% | (many diffs) |
| 21 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446640.1 | 65.4% | 54.6% | (many diffs) |
| 22 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446641.1 | 65.4% | 54.6% | (many diffs) |
| 23 | human | 56242 | ZNF253 | zinc finger protein 253 | NM_001331133.1 | 65.4% | 54.4% | (many diffs) |
| 24 | human | 7562 | ZNF708 | zinc finger protein 708 | XM_017027201.1 | 64.7% | 55.6% | (many diffs) |
| 25 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_003429.5 | 64.4% | 54.8% | (many diffs) |
| 26 | human | 56242 | ZNF253 | zinc finger protein 253 | NM_001331134.1 | 63.2% | 52.2% | (many diffs) |
| 27 | human | 81931 | ZNF93 | zinc finger protein 93 | NM_031218.4 | 62% | 52.9% | (many diffs) |
| 28 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256171.1 | 61.4% | 52% | (many diffs) |
| 29 | human | 100129842 | ZNF737 | zinc finger protein 737 | XM_017026117.2 | 60.1% | 51.6% | (many diffs) |
| 30 | human | 7639 | ZNF85 | zinc finger protein 85 | XM_011528263.2 | 60% | 51% | (many diffs) |
| 31 | human | 100129842 | ZNF737 | zinc finger protein 737 | XR_001753570.2 | 56.2% | (many diffs) | |
| 32 | human | 7608 | ZNF56 | zinc finger protein 56 | NM_001355194.2 | 38% | 26.6% | (many diffs) |
| 33 | human | 664701 | ZNF826P | zinc finger protein 826, ps... | NR_036455.1 | 35.3% | (many diffs) | |
| 34 | human | 105372319 | LOC105372319 | zinc finger protein 430-like | XM_017027571.1 | 34.2% | 22.4% | (many diffs) |
| 35 | human | 7643 | ZNF90 | zinc finger protein 90 | XR_001753753.2 | 28.8% | (many diffs) | |
| 36 | human | 10793 | ZNF273 | zinc finger protein 273 | NR_003099.1 | 26.9% | (many diffs) | |
| 37 | human | 199777 | ZNF626 | zinc finger protein 626 | NM_145297.3 | 17.8% | 15% | (many diffs) |
| 38 | human | 440519 | ZNF724 | zinc finger protein 724 | XM_024451521.1 | 14.6% | 12.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1458
- ORF length:
- 1389
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCCGGGACCC CTTAGAAGCC TAGAAATGGA ATCATTGCAA TTTAGAGATG 121 TGGCTGTAGA ATTCTCTCTG GAGGAGTGGC ATTGCCTGGA CACTGCACAG CAGAATTTAT 181 ATAGGGATGT GATGTTAGAG AACTACAGAC ACCTGGTCTT CCTTGGTATT ATTGTCTCTA 241 AGCCAGACCT GATCACCTGT CTGGAGCAAG GAATAAAACC TCTGACTATG AAGAGACATG 301 AGATGATTGC CAAACCCCCA GTTGTGTGTT CTCATTTTGC CCAAGACCTT TGGCCAGAGC 361 AGAGCATAAA AGATTCTTAC CAAAAAGTGA TACTGAGAAA ATTTGAAAAA TGTGGACATG 421 GCAATTTACA CTTTAAAAAA GGCTGTGAAA GTGTGGATGA GTGTAAGTTA CACAAAAGAG 481 ATTATAATGG ACTTAACCAA TGTTTGACAA CTACCCAGAG CAAAATATTT CAATGTGGTA 541 AATATGTGAA AGTCTTTCAT CAATTTTCAA ATTCAAAGAG ACATAAAAGA AGACATACTG 601 AAAAAAAACC TTTGAAATAT ATAGAAGGTG ACAAAGCTTT TAACCAGTCC TCAACCCATA 661 CTACACATAA AAAAATTGAT ACTGGAGAGA AACCATACAA ATGTGAAGAA TGTGGCAAAG 721 CCTTCAACCG GTCCTCACAC CTTACTACAC ATAAGATAAC TCATACTAGA GAGAAACCCT 781 ACAAATGTGA AGAATGTGGC AAAGTCTTTA AGTACTTCTC TAGCTTTACT ACACATAAGA 841 AAATTCATAG TGGAGAGAAA CCCTACATTT GTGAAGAATG TGGCAAAGCC TTTATGTACC 901 CCTATACCCT TACTACACAT AAGATAATCC ATACTGGAGA GCAACCCTAC AAATGTAAAG 961 AATGTGACAA AGCTTTTAAC CATCCTGCAA CTCTTTCTTC ACATAAGAAA ATTCATACTG 1021 GAGAGAAACC GTACACGTGT GATAAATGTG GCAAAGCCTT TATTTCATCC TCGATCCTTA 1081 GTAAACATGA GAAGATTCAT ACGGGAGAGA AACCCTACAA ATGTGAAGAA TGTGGCAAAG 1141 CCTTCACCCG CTCCTCACAC CTTACTATGC ATAAGATAAT TCATACTGGA GAGAAACCAT 1201 ACAAATGTGA AGAATGTGGC AAAGCCTTTA CATGGTCTGC AGGCCTCCAT AAACATAGGA 1261 GAACTCATAC TGGAGAGAAA CCCTACAAAT GTGAAGAATG TGGCAAAGCG TATACTACAT 1321 CCTCAAATCT AACTGAACAT AAGACAACTC ATACTGGAGA GAAACCTTAC AAATGTAAAG 1381 AATGTGGCAA AGCTTTTAAC TGGTCCTCAG ACCTTAATAA ACATAAGAGA ATTCATATTG 1441 GACAGAAACC AAGAACGTTG CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1501 gcttatcaat ttgttgcaac gaac