Transcript: Human XM_017027201.1

PREDICTED: Homo sapiens zinc finger protein 708 (ZNF708), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF708 (7562)
Length:
2121
CDS:
119..1792

Additional Resources:

NCBI RefSeq record:
XM_017027201.1
NBCI Gene record:
ZNF708 (7562)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017027201.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000164774 CCTGGGTATTGCTGTGTCTAA pLKO.1 226 CDS 100% 4.950 6.930 N ZNF708 n/a
2 TRCN0000239659 AGGAGGTCACAAGGGACTTAA pLKO_005 466 CDS 100% 13.200 9.240 N ZNF708 n/a
3 TRCN0000239658 GACCTTAGGCCAGAGCAATAT pLKO_005 350 CDS 100% 13.200 9.240 N ZNF708 n/a
4 TRCN0000239657 GGATATCAGAAAGGCTGTAAA pLKO_005 419 CDS 100% 13.200 9.240 N ZNF708 n/a
5 TRCN0000239656 TATTCTGTCCTCTCATCTTAC pLKO_005 1555 CDS 100% 10.800 7.560 N ZNF708 n/a
6 TRCN0000012931 CCCAGCTATGTGTTCTCATTT pLKO.1 322 CDS 100% 13.200 6.600 Y ZNF141 n/a
7 TRCN0000160536 CTCAACCCTTATGAAACATAA pLKO.1 1648 CDS 100% 13.200 6.600 Y ZNF708 n/a
8 TRCN0000428574 CTGAAGAGAAACCCTACAAAT pLKO_005 1176 CDS 100% 13.200 6.600 Y ZNF138 n/a
9 TRCN0000243748 CTGGAAAGAAACCCTACAAAT pLKO_005 1344 CDS 100% 13.200 6.600 Y Gm6871 n/a
10 TRCN0000096537 CTGGAGAGAAACCCTACAAAT pLKO.1 756 CDS 100% 13.200 6.600 Y Zfp934 n/a
11 TRCN0000235358 CTGGAGAGAAACCCTACAAAT pLKO_005 756 CDS 100% 13.200 6.600 Y 2810408B13Rik n/a
12 TRCN0000244342 CTGGAGAGAAACCCTACAAAT pLKO_005 756 CDS 100% 13.200 6.600 Y EG668616 n/a
13 TRCN0000218427 ACTGGAGAGAAACCCTATAAA pLKO_005 1511 CDS 100% 15.000 7.500 Y ZNF443 n/a
14 TRCN0000374174 ACTGGAGAGAAACCCTATAAA pLKO_005 1511 CDS 100% 15.000 7.500 Y Zfp97 n/a
15 TRCN0000017702 CCCTGGAATATGAAGAGACAT pLKO.1 284 CDS 100% 4.950 2.475 Y ZNF430 n/a
16 TRCN0000149073 GCAAAGCCTTTAACCAGTCTT pLKO.1 1713 CDS 100% 4.950 2.475 Y ZNF714 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017027201.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15278 pDONR223 59.5% 80.9% 70.5% None (many diffs) n/a
2 ccsbBroad304_15278 pLX_304 0% 80.9% 70.5% V5 (many diffs) n/a
3 ccsbBroadEn_13028 pDONR223 100% 78% 68.1% None (many diffs) n/a
4 ccsbBroad304_13028 pLX_304 0% 78% 68.1% V5 (many diffs) n/a
5 TRCN0000468257 GTACACCAGACCACTACATGCGAC pLX_317 25.6% 78% 68.1% V5 (many diffs) n/a
6 ccsbBroadEn_09784 pDONR223 100% 76.6% 65.5% None (many diffs) n/a
7 ccsbBroad304_09784 pLX_304 0% 76.6% 65.5% V5 (many diffs) n/a
8 TRCN0000478115 ATTTTTATATATACCACTCGGCCC pLX_317 19.7% 76.6% 65.5% V5 (many diffs) n/a
9 ccsbBroadEn_15167 pDONR223 53.6% 75.2% 30.8% None (many diffs) n/a
10 ccsbBroad304_15167 pLX_304 0% 75.2% 30.8% V5 (not translated due to prior stop codon) (many diffs) n/a
11 ccsbBroadEn_11550 pDONR223 100% 75.2% 64.4% None (many diffs) n/a
12 ccsbBroad304_11550 pLX_304 0% 75.2% 64.4% V5 (many diffs) n/a
13 ccsbBroadEn_08635 pDONR223 100% 72.5% 61.9% None (many diffs) n/a
14 ccsbBroad304_08635 pLX_304 0% 72.5% 61.9% V5 (many diffs) n/a
15 TRCN0000469248 TACCCGCTTGGCTTTAAAAACCAA pLX_317 37.7% 56.2% 46.8% V5 (many diffs) n/a
16 ccsbBroadEn_09774 pDONR223 100% 72.5% 62.3% None (many diffs) n/a
17 ccsbBroad304_09774 pLX_304 0% 72.5% 62.3% V5 (many diffs) n/a
18 TRCN0000472815 CCTGACTCCCTTTAAGTGTTCGTG pLX_317 27.4% 72.5% 62.3% V5 (many diffs) n/a
19 ccsbBroadEn_02188 pDONR223 100% 72.1% 63.5% None (many diffs) n/a
20 ccsbBroad304_02188 pLX_304 0% 72.1% 63.5% V5 (many diffs) n/a
21 TRCN0000476436 TCCGTGTTGGTCAAGCGACGCGCC pLX_317 12.5% 72.1% 63.5% V5 (many diffs) n/a
22 ccsbBroadEn_15273 pDONR223 50.9% 71.4% 61% None (many diffs) n/a
23 ccsbBroad304_15273 pLX_304 0% 71.4% 61% V5 (many diffs) n/a
24 TRCN0000472761 GCGGTTCAATGTTGTAGTCTTGTG pLX_317 63.8% 30.6% 25.6% V5 (not translated due to frame shift) (many diffs) n/a
25 ccsbBroadEn_09302 pDONR223 100% 64.7% 55.6% None (many diffs) n/a
26 ccsbBroad304_09302 pLX_304 0% 64.7% 55.6% V5 (many diffs) n/a
27 TRCN0000478136 TCTGGATTCCTTTAAAAGGATTTC pLX_317 23% 64.7% 55.6% V5 (many diffs) n/a
28 ccsbBroadEn_07157 pDONR223 100% 59.9% 53.1% None (many diffs) n/a
29 ccsbBroad304_07157 pLX_304 0% 59.9% 53.1% V5 (many diffs) n/a
30 TRCN0000475452 TAAAACTTCAACTTGGTTTCCTTC pLX_317 10.2% 59.9% 53.1% V5 (many diffs) n/a
31 ccsbBroadEn_15729 pDONR223 0% 11.7% 10.7% None (many diffs) n/a
32 ccsbBroad304_15729 pLX_304 0% 11.7% 10.7% V5 (many diffs) n/a
33 TRCN0000470492 GCCGACTTGCTCCATGATGCAGCT pLX_317 100% 11.7% 10.7% V5 (many diffs) n/a
34 ccsbBroadEn_11384 pDONR223 100% 11.3% 10.4% None (many diffs) n/a
35 ccsbBroad304_11384 pLX_304 0% 11.3% 10.4% V5 (many diffs) n/a
36 TRCN0000470576 TACATACAGACCTACACGTAGACC pLX_317 100% 11.3% 10.4% V5 (many diffs) n/a
37 ccsbBroadEn_13746 pDONR223 100% 11% 10.1% None (many diffs) n/a
38 ccsbBroad304_13746 pLX_304 0% 11% 10.1% V5 (many diffs) n/a
39 TRCN0000475669 ATTCGCAGCGAGTTTGTCCGCCGC pLX_317 100% 11% 10.1% V5 (many diffs) n/a
Download CSV