Construct: ORF ccsbBroadEn_09774
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001984.1_s300c1, BRDN0000396736
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF92 (168374)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 168374 | ZNF92 | zinc finger protein 92 | NM_007139.4 | 99.9% | 99.8% | 1268A>G |
| 2 | human | 168374 | ZNF92 | zinc finger protein 92 | NM_001287533.2 | 98.5% | 98.4% | 0_1ins21;1247A>G |
| 3 | human | 168374 | ZNF92 | zinc finger protein 92 | NM_001287534.2 | 98.5% | 98.4% | 0_1ins21;1247A>G |
| 4 | human | 168374 | ZNF92 | zinc finger protein 92 | NM_001287532.1 | 93% | 92.2% | (many diffs) |
| 5 | human | 168374 | ZNF92 | zinc finger protein 92 | NM_152626.4 | 88.1% | 88% | 1_207del;1475A>G |
| 6 | human | 7562 | ZNF708 | zinc finger protein 708 | NM_001297560.1 | 80.5% | 69.2% | (many diffs) |
| 7 | human | 7562 | ZNF708 | zinc finger protein 708 | NM_001297561.1 | 80.5% | 69.2% | (many diffs) |
| 8 | human | 7562 | ZNF708 | zinc finger protein 708 | XM_017027202.2 | 80.2% | 69.3% | (many diffs) |
| 9 | human | 7562 | ZNF708 | zinc finger protein 708 | XM_017027203.2 | 80.2% | 69.3% | (many diffs) |
| 10 | human | 170959 | ZNF431 | zinc finger protein 431 | NM_001319127.2 | 77.7% | 66.7% | (many diffs) |
| 11 | human | 170959 | ZNF431 | zinc finger protein 431 | NM_001319126.2 | 77.4% | 65.5% | (many diffs) |
| 12 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_024446742.1 | 74.5% | 63.4% | (many diffs) |
| 13 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_001351671.2 | 73% | 61.7% | (many diffs) |
| 14 | human | 7562 | ZNF708 | zinc finger protein 708 | XM_017027204.2 | 72.7% | 61.9% | (many diffs) |
| 15 | human | 7562 | ZNF708 | zinc finger protein 708 | XM_017027201.1 | 72.5% | 62.3% | (many diffs) |
| 16 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446635.1 | 72% | 61.9% | (many diffs) |
| 17 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446636.1 | 72% | 61.9% | (many diffs) |
| 18 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446637.1 | 72% | 61.9% | (many diffs) |
| 19 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446638.1 | 72% | 61.9% | (many diffs) |
| 20 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446639.1 | 72% | 61.9% | (many diffs) |
| 21 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446640.1 | 72% | 61.9% | (many diffs) |
| 22 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446641.1 | 72% | 61.9% | (many diffs) |
| 23 | human | 7562 | ZNF708 | zinc finger protein 708 | NM_021269.3 | 71.8% | 61.7% | (many diffs) |
| 24 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_006715959.2 | 69.5% | 59.2% | (many diffs) |
| 25 | human | 170959 | ZNF431 | zinc finger protein 431 | NM_133473.4 | 66% | 56.6% | (many diffs) |
| 26 | human | 170959 | ZNF431 | zinc finger protein 431 | NM_001319124.2 | 65.9% | 56.5% | (many diffs) |
| 27 | human | 80264 | ZNF430 | zinc finger protein 430 | NM_001172671.2 | 65.2% | 54.4% | (many diffs) |
| 28 | human | 80264 | ZNF430 | zinc finger protein 430 | NM_025189.4 | 65.1% | 54.3% | (many diffs) |
| 29 | human | 340252 | ZNF680 | zinc finger protein 680 | NM_178558.5 | 64.8% | 55.1% | (many diffs) |
| 30 | human | 646864 | ZNF723 | zinc finger protein 723 | NM_001349726.2 | 64.7% | 56.4% | (many diffs) |
| 31 | human | 646864 | ZNF723 | zinc finger protein 723 | XM_024451652.1 | 64.7% | 56.4% | (many diffs) |
| 32 | human | 10793 | ZNF273 | zinc finger protein 273 | NM_021148.2 | 64.5% | 55.4% | (many diffs) |
| 33 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_001351670.2 | 64.3% | 54% | (many diffs) |
| 34 | human | 170959 | ZNF431 | zinc finger protein 431 | XM_011527750.2 | 64.3% | 55.1% | (many diffs) |
| 35 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_001351669.2 | 61.2% | 51.7% | (many diffs) |
| 36 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_173531.4 | 61.1% | 51.6% | (many diffs) |
| 37 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256651.2 | 60.2% | 50.5% | (many diffs) |
| 38 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256654.2 | 60.2% | 50.5% | (many diffs) |
| 39 | human | 284443 | ZNF493 | zinc finger protein 493 | NM_175910.7 | 58.1% | 51% | (many diffs) |
| 40 | human | 284443 | ZNF493 | zinc finger protein 493 | NM_001076678.3 | 57.7% | 50.1% | (many diffs) |
| 41 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256648.2 | 55.8% | 46.8% | (many diffs) |
| 42 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256649.2 | 55.8% | 46.8% | (many diffs) |
| 43 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256650.2 | 55.8% | 46.8% | (many diffs) |
| 44 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_011528257.3 | 55.8% | 46.8% | (many diffs) |
| 45 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_011528259.3 | 55.8% | 46.8% | (many diffs) |
| 46 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027207.2 | 55.8% | 46.8% | (many diffs) |
| 47 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027208.2 | 55.8% | 46.8% | (many diffs) |
| 48 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027209.2 | 55.8% | 46.8% | (many diffs) |
| 49 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027210.2 | 55.8% | 46.8% | (many diffs) |
| 50 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027211.2 | 55.8% | 46.8% | (many diffs) |
| 51 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027212.2 | 55.8% | 46.8% | (many diffs) |
| 52 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027213.2 | 55.8% | 46.8% | (many diffs) |
| 53 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027214.2 | 55.8% | 46.8% | (many diffs) |
| 54 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027215.2 | 55.8% | 46.8% | (many diffs) |
| 55 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027216.2 | 55.8% | 46.8% | (many diffs) |
| 56 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_017012126.1 | 55.7% | 46.8% | (many diffs) |
| 57 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_017012127.1 | 55.7% | 46.8% | (many diffs) |
| 58 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_017012128.1 | 55.7% | 46.8% | (many diffs) |
| 59 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_024446743.1 | 55.7% | 46.8% | (many diffs) |
| 60 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_024446744.1 | 55.7% | 46.8% | (many diffs) |
| 61 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_024446745.1 | 55.7% | 46.8% | (many diffs) |
| 62 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_024446746.1 | 55.7% | 46.8% | (many diffs) |
| 63 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_024446747.1 | 55.7% | 46.8% | (many diffs) |
| 64 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_024446748.1 | 55.7% | 46.8% | (many diffs) |
| 65 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_003423.4 | 55.4% | 46.4% | (many diffs) |
| 66 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_001351672.2 | 54.8% | 46.6% | (many diffs) |
| 67 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256653.1 | 54.8% | 45.9% | (many diffs) |
| 68 | human | 148203 | ZNF738 | zinc finger protein 738 | NM_001355237.2 | 38.6% | 33% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1617
- ORF length:
- 1551
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT AGACAAAACC CCAGTTATGT GTTCTCATTT TGCCCAAGAT GTTTGGCCAG 121 AGCACAGCAT AAAAGATTCT TTCCAAAAAG TGATACTGAG AACATATGGA AAATATGGAC 181 ATGAGAATTT ACAGCTAAGA AAAGACCATA AAAGTGTGGA TGCATGTAAG GTGTACAAAG 241 GAGGTTATAA TGGACTTAAC CAGTGTTTGA CAACTACTGA CAGCAAGATA TTTCAGTGTG 301 ATAAATATGT GAAAGTCTTT CATAAATTTC CAAATGTAAA TAGAAATAAG ATAAGACATA 361 CTGGAAAGAA ACCTTTCAAA TGTAAAAACC GTGGCAAATC ATTTTGCATG CTTTCACAAT 421 TAACTCAACA TAAGAAAATT CATACTAGAG AGTATTCTTA CAAATGTGAA GAATGTGGTA 481 AAGCCTTTAA CTGGTCCTCA ACCCTTACTA AACATAAGAT AATTCATACT GGAGAAAAAC 541 CCTACAAATG TGAAGAATGT GGCAAAGCTT TTAACCGGTC CTCAAATCTT ACTAAACATA 601 AAATAATTCA TACTGGAGAG AAACCCTACA AATGTGAAGA ATGTGGCAAA GCTTTTAACC 661 GGTCCTCAAC CCTTACTAAA CATAAAAGAA TTCATACAGA AGAGAAACCC TACAAATGTG 721 AAGAATGTGG CAAGGCCTTT AACCAGTTCT CGATTCTTAA TAAACATAAG AGAATTCATA 781 TGGAAGATAA ACCCTACAAA TGTGAAGAAT GTGGCAAAGC CTTTAGAGTA TTCTCAATTC 841 TTAAAAAACA TAAGATAATC CATACTGGGG AAAAACCATA CAAATGTGAA GAATGTGGCA 901 AAGCCTTTAA CCAGTTCTCA AACCTTACTA AACATAAGAT AATTCATACT GGAGAGAAAC 961 CCTACAAATG TGATGAATGT GGCAAAGCCT TTAACCAGTC CTCAACCCTT ACTAAACATA 1021 AAAGAATTCA TACGGGAGAA AAACCCTACA AATGTGAAGA ATGTGGCAAA GCTTTTAAAC 1081 AGTCCTCAAC CCTTACTGAA CATAAGATAA TTCATACTGG AGAGAAACCC TACAAATGTG 1141 AAAAATGTGG CAAGGCCTTT AGCTGGTCCT CAGCTTTTAC TAAACATAAG AGAAATCATA 1201 TGGAAGATAA ACCCTACAAA TGTGAAGAAT GTGGCAAAGC CTTTAGTGTA TTCTCAACCC 1261 TTACTAAACA TAAAATAATT CATACTAGAG AAAAACCCTA CAAATGTGAA GAATGTGGCA 1321 AAGCCTTTAA CCGGTCCTCA ATTTTTACTA AACATAAGAT AATTCACACT GAAGGGAAAT 1381 CCTACAAATG TGAAAAATGT GGCAATGCTT TTAACCAGTC CTCAAACCTT ACTGCACGTA 1441 AGATAATTTA TACTGGAGAG AAACCCTACA AATATGAAGA ATGTGACAAA GCCTTTAACA 1501 AGTTCTCAAC CCTTATTACA CATCAGATAA TTTATACTGG AGAGAAACCC TGCAAACATG 1561 AATGTGGCAG AGCCTTTAAC AAATCCTCAA ATTATACTAA AGAGAAACTA CAAACCTGCC 1621 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1681 aac