Construct: ORF ccsbBroadEn_11550
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011275.1_s300c1, BRDN0000390682
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF273 (10793)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446635.1 | 100% | 100% | |
| 2 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446636.1 | 100% | 100% | |
| 3 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446637.1 | 100% | 100% | |
| 4 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446638.1 | 100% | 100% | |
| 5 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446639.1 | 100% | 100% | |
| 6 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446640.1 | 100% | 100% | |
| 7 | human | 10793 | ZNF273 | zinc finger protein 273 | XM_024446641.1 | 100% | 100% | |
| 8 | human | 10793 | ZNF273 | zinc finger protein 273 | NM_021148.2 | 88.5% | 88.5% | 1_195del |
| 9 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_006715959.2 | 83.2% | 72.6% | (many diffs) |
| 10 | human | 646864 | ZNF723 | zinc finger protein 723 | NM_001349726.2 | 77% | 65.8% | (many diffs) |
| 11 | human | 646864 | ZNF723 | zinc finger protein 723 | XM_024451652.1 | 77% | 65.8% | (many diffs) |
| 12 | human | 340252 | ZNF680 | zinc finger protein 680 | NM_178558.5 | 76.9% | 67.1% | (many diffs) |
| 13 | human | 646864 | ZNF723 | zinc finger protein 723 | XM_024451653.1 | 76.8% | 65.6% | (many diffs) |
| 14 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_024446742.1 | 76.6% | 66.6% | (many diffs) |
| 15 | human | 7562 | ZNF708 | zinc finger protein 708 | XM_017027201.1 | 75.2% | 64.4% | (many diffs) |
| 16 | human | 7562 | ZNF708 | zinc finger protein 708 | NM_021269.3 | 74.4% | 63.7% | (many diffs) |
| 17 | human | 168374 | ZNF92 | zinc finger protein 92 | NM_152626.4 | 73.9% | 63.9% | (many diffs) |
| 18 | human | 7562 | ZNF708 | zinc finger protein 708 | XM_017027204.2 | 72.3% | 62.5% | (many diffs) |
| 19 | human | 168374 | ZNF92 | zinc finger protein 92 | NM_007139.4 | 72% | 61.9% | (many diffs) |
| 20 | human | 168374 | ZNF92 | zinc finger protein 92 | NM_001287533.2 | 70.8% | 61% | (many diffs) |
| 21 | human | 168374 | ZNF92 | zinc finger protein 92 | NM_001287534.2 | 70.8% | 61% | (many diffs) |
| 22 | human | 148213 | ZNF681 | zinc finger protein 681 | NM_138286.3 | 66.8% | 58.6% | (many diffs) |
| 23 | human | 90649 | ZNF486 | zinc finger protein 486 | NM_052852.4 | 65.5% | 54.8% | (many diffs) |
| 24 | human | 440515 | ZNF506 | zinc finger protein 506 | NM_001099269.3 | 64.8% | 53.7% | (many diffs) |
| 25 | human | 284443 | ZNF493 | zinc finger protein 493 | NM_001076678.3 | 55.9% | 47.2% | (many diffs) |
| 26 | human | 51427 | ZNF107 | zinc finger protein 107 | NM_001282359.1 | 50.3% | 42.2% | (many diffs) |
| 27 | human | 148203 | ZNF738 | zinc finger protein 738 | NM_001355237.2 | 47.2% | 41.9% | (many diffs) |
| 28 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001271639.2 | 45.5% | 40.2% | (many diffs) |
| 29 | human | 340252 | ZNF680 | zinc finger protein 680 | XR_428175.4 | 44% | (many diffs) | |
| 30 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001367572.1 | 43.9% | 38.2% | (many diffs) |
| 31 | human | 340252 | ZNF680 | zinc finger protein 680 | XR_001744687.1 | 41.8% | (many diffs) | |
| 32 | human | 340252 | ZNF680 | zinc finger protein 680 | XR_002956428.1 | 41.4% | (many diffs) | |
| 33 | human | 10793 | ZNF273 | zinc finger protein 273 | NR_003099.1 | 34.2% | 1_360del;1873_4414del | |
| 34 | human | 9534 | ZNF254 | zinc finger protein 254 | NM_001278665.2 | 7.9% | 7.3% | (many diffs) |
| 35 | human | 440519 | ZNF724 | zinc finger protein 724 | XM_024451521.1 | 7.7% | 7.2% | (many diffs) |
| 36 | human | 51427 | ZNF107 | zinc finger protein 107 | XM_024446791.1 | 7.4% | 6.7% | (many diffs) |
| 37 | human | 730087 | ZNF726 | zinc finger protein 726 | NM_001348689.2 | 7.2% | 6.1% | (many diffs) |
| 38 | human | 148203 | ZNF738 | zinc finger protein 738 | NM_001355241.2 | 6.9% | 6.3% | (many diffs) |
| 39 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001271637.2 | 5.1% | 2.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1578
- ORF length:
- 1512
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT AGATAACTAC AGAAACCTGG TCTTCCTGGG TATTGCTGTC TCTAAGCCAG 121 ACCTGATCAC TTGTCTGGAG CAAGGAAAAG AGCCCTGCAA TATGAAGAGA CATGCGATGG 181 TAGCCAAACC CCCAGTTGTG TGTTCTCATT TTGCCCAAGA CCTTTGGCCA AAGCAGGGCT 241 TAAAAGATTC TTTTCAAAAA GTGATACTGA GAAGATATGG AAAATATGGA CATGAGAATT 301 TACAATTAAG AAAAGGCTGT AAAAGTGCGG ATGAGCATAA GGTGCACAAA AGAGGTTATA 361 ATGGACTTAA CCAATGTTTG ACAACTACCC AGAGCAAAAT ATTTCAATGT GATAAATATG 421 TTAAAGTCCT TCATAAATTC TCAAATTCAA ATATACATAA GAAAAGACAA ACTGGAAAGA 481 AACCTTTCAA ATGTAAAGAA TGTGGCAAAT CATGTTGCAT ACTTTCACAA CTAACTCAGC 541 ATAAGAAAAC TGCTACTAGA GTGAATTTCT ACAAATGTAA GACATGTGGA AAAGCCTTTA 601 ACCAGTTCTC AAATCTTACT AAACATAAGA TAATTCATCC TGAAGTGAAT CCCTACAAAT 661 GTGAAGAATG TGGCAAAGCC TTTAACCAGT CCTTAACTCT TACTAAACAT AAAAAAATTC 721 ATACTGAAGA GAAACCTTAC AAATGTGAAG ATTGTGGCAA AGTCTTTAGT GTATTTTCAG 781 TCCTTACTAA ACATAAGATA ATTCATACAG GAACAAAACC CTACAATTGT GAAGAATGTG 841 GCAAAGGCTT TAGTATATTC TCAACCCTTA CTAAACATAA GATAATTCAT ACTGGAGAGA 901 AACCCTACAA ATGCAATGAA TGTGGTAAAG CCTTTAACTG GTCCTCAACT CTTACTAAAC 961 ATAAGAGAAT TCATACTGGA GAGAAACCCT ACAAATGTGA AGAATGTGGC AAAGCTTTTA 1021 ACCAGTCCTC AACCCTTACT AGACATAAGA TAGTTCATAC TGGAGAGAAA CCCTACAAAT 1081 GTGAAGAATG TGGTAAAGCC TTTAAACGGT CCACAACTCT TACTAAACAT AAGAGAATTT 1141 ATACTAAAGA GAAACCATAC AAATGTGAAG AATGTGGAAA AGCCTTTAGT GTATTCTCAA 1201 CCCTTACTAA ACATAAGATA ATTCATACTG GAGCAAAACC TTACAAATGT GAAGAATGTG 1261 GCAGTGCCTT TAGGGCATTC TCAACCCTTA CTGAACATAA GAGAGTTCAT ACTGGAGAGA 1321 AACCTTACAA ATGCAATGAA TGTGGTAAAG CCTTTAACTG GTCCTCAACT CTTACTAAAC 1381 ATAAGAGAAT TCATACTGGA GAGAAGCCCT ACAAATGTGA AGAATGTGGC AAAGCTTTTA 1441 ACCGGTCCTC AAACCTTACT CGACATAAGA AAATTCATAC TGGAGAGAAA CCATACAAAC 1501 CTAAAAGATG TGACAGTGCT TTTGACAACA CCCCAAACTT TTCTAGACAT AAAAGAAATC 1561 ATATGGGTGA GAAATCCTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1621 gcttatcaat ttgttgcaac gaac