Construct: ORF ccsbBroadEn_12975
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017983.1_s300c1, BRDN0000390388
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- INTS4 (92105)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 92105 | INTS4 | integrator complex subunit 4 | XR_001748041.2 | 69.2% | (many diffs) | |
| 2 | human | 644619 | INTS4P2 | integrator complex subunit ... | NR_027392.2 | 64.9% | (many diffs) | |
| 3 | human | 92105 | INTS4 | integrator complex subunit 4 | XR_002957209.1 | 59.8% | 1_361del;389_495del;1999_2555del | |
| 4 | human | 92105 | INTS4 | integrator complex subunit 4 | XM_011545352.2 | 59% | 56.5% | (many diffs) |
| 5 | human | 92105 | INTS4 | integrator complex subunit 4 | XM_017018560.2 | 55.3% | 53% | (many diffs) |
| 6 | human | 92105 | INTS4 | integrator complex subunit 4 | XM_011545353.3 | 54.9% | 53.3% | (many diffs) |
| 7 | human | 92105 | INTS4 | integrator complex subunit 4 | NM_033547.4 | 52.3% | 50.1% | (many diffs) |
| 8 | human | 92105 | INTS4 | integrator complex subunit 4 | XR_001748037.2 | 49.4% | (many diffs) | |
| 9 | human | 92105 | INTS4 | integrator complex subunit 4 | XR_001748036.2 | 48.5% | (many diffs) | |
| 10 | human | 92105 | INTS4 | integrator complex subunit 4 | XR_001748039.2 | 46.3% | (many diffs) | |
| 11 | human | 92105 | INTS4 | integrator complex subunit 4 | XR_001748040.2 | 45.1% | (many diffs) | |
| 12 | human | 285905 | INTS4P1 | integrator complex subunit ... | NR_146905.1 | 39.5% | (many diffs) | |
| 13 | human | 285905 | INTS4P1 | integrator complex subunit ... | NR_146906.1 | 35.4% | (many diffs) | |
| 14 | human | 92105 | INTS4 | integrator complex subunit 4 | XR_002957208.1 | 28.7% | (many diffs) | |
| 15 | mouse | 101861 | Ints4 | integrator complex subunit 4 | XM_006507179.3 | 47.9% | 48.9% | (many diffs) |
| 16 | mouse | 101861 | Ints4 | integrator complex subunit 4 | NM_027256.2 | 47.9% | 48.8% | (many diffs) |
| 17 | mouse | 101861 | Ints4 | integrator complex subunit 4 | XM_006507180.1 | 47% | 47.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1596
- ORF length:
- 1530
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC ATCAACATCC TGCAGAATGA AACATCTGAC AGATACGTCT CATGGTGTAA 121 GAAATAAGTG CCTGCAGTTA CTTGGCAATC TTGGCTCTTT GGAGAAAAGT GTCACAAAAG 181 ATGCAGAAGG CCTAGCTGCC AGAGATGTCC AGAAGATTAT AGGGGATTAC TTCAGTGACC 241 AAGACCCACG TGTCAGAACA GCAGCTATAA AAGCCATGTT GCAGCTCCAT GAAAGAGGAC 301 TGAAATTACA CCAAACAATT TATAATCAGG CCTGTAAATT ACTCTCTGAT GACTATGAAC 361 AAGTGCGCAG TGCTGCAGTC CAGCTTATCT GGGTCGTCAG TCAGCTCTAT CCTGAAAGCA 421 TTGTCCCAAT TCCTTCTTCT AATGAAGAAA TACGCTTAGT TGATGATGCG TTTGGCAAAA 481 TTTGTCACAT GGTCAGTGAT GGCTCTTGGG TGGTTCGTGT TCAGGCAGCA AAACTGTTGG 541 GCTCTATGGA GCAAGTCAGT TCTCATTTCT TGGAGCAGAC CCTTGACAAG AAGCTGATGT 601 CAGATCTGAG GAGGAAACGT ACTGCACATG AGCGTGCCAA GGAACTTTAC AGTTCGGGGG 661 AGTTTTCCAG TGGCAGAAAG TGGGGAGATG ATGCTCCCAA GGAAGAAGTA GATACCGGGG 721 CTGTGAACTT GATTGAGTCA GGAGCTTGTG GAGCTTTTGT TCATGGGTTG GAAGATGAGA 781 TGTATGAGGT TCGTATTGCT GCTGTGGAGG CCCTCTGCAT GTTGGCCCAG TCTTCACCCT 841 CTTTTGCTGA GAAGTGCCTT GATTTCCTAG TTGACATGTT CAACGATGAA ATTGAGGAAG 901 TACGTCTGCA GTCTATACAT ACCATGAGAA AAATCTCTAA CAACATCACC CTCCGAGAAG 961 ATCAGCTTGA CACTGTCCTG GCTGTGCTAG AGGATTCATC CAGAGATATT CGAGAGGCTC 1021 TTCATGAACT CTTATGCTGT ACTAATGTTT CAACCAAAGA AGGGATTCAT CTTGCATTGG 1081 TGGAGCTGCT GAAAAATTTA ACCAAGTACC CTACTGATAG GGACTCCATA TGGAAGTGCT 1141 TGAAGTTTCT GGGAAGTCGG CATCCAACCC TGGTGCTTCC CTTGGTGCCA GAGCTTCTGA 1201 GCACCCACCC ATTTTTTGAC ACAGCTGAAC CAGACATGGA TGATCCAGCT TATATTGCAG 1261 TTTTGGTACT TATTTTCAAT GCTGCTAAAA CCTGTCCAAC AATGCCAGCA TTGTTCTCAG 1321 ATCACACCTT CAGGCACTAT GCCTACCTCC GAGACAGTCT TTCTCATCTT GTTCCTGCCT 1381 TGAGGTTACC AGGTAGAAAA CTGGTGTCAT CAGCTGTTTC TCCCAGCATC ATACCTCAAG 1441 AGGATCCTTC CCAGCAGTTC CTGCAGCAGA GCCTTGAAAG AGTGTATAGT CTTCAGCACT 1501 TGGACCCTCA GGGAGCCCAG GAGCTGCTGG AATTCACCAT CAGAGTCGAG GTTTCACCAT 1561 GGTGGCCAGG CTGGTCTCAA ACTCCTGAGC TCAAGTGCCC AACTTTCTTG TACAAAGTtg 1621 gcattataag aaagcattgc ttatcaattt gttgcaacga ac