Construct: ORF TRCN0000469248

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001484.1_s317c1
Derived from:
ccsbBroadEn_08635
DNA Barcode:
TACCCGCTTGGCTTTAAAAACCAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF253 (56242)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469248
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56242 ZNF253 zinc finger protein 253 NM_021047.3 77.5% 77.5% 987_1322del
2 human 440515 ZNF506 zinc finger protein 506 NM_001099269.3 77% 68% (many diffs)
3 human 90649 ZNF486 zinc finger protein 486 NM_052852.4 72.4% 56.1% (many diffs)
4 human 440515 ZNF506 zinc finger protein 506 NM_001145404.2 70.3% 61.4% (many diffs)
5 human 646864 ZNF723 zinc finger protein 723 NM_001349726.2 64.7% 51.4% (many diffs)
6 human 646864 ZNF723 zinc finger protein 723 XM_024451652.1 64.7% 51.4% (many diffs)
7 human 56242 ZNF253 zinc finger protein 253 NM_001331133.1 64.7% 64.7% 0_1ins192;795_1130del
8 human 199777 ZNF626 zinc finger protein 626 NM_001076675.3 64.5% 54.7% (many diffs)
9 human 100129842 ZNF737 zinc finger protein 737 NM_001159293.2 63.3% 55.2% (many diffs)
10 human 56242 ZNF253 zinc finger protein 253 NM_001331134.1 62.3% 62.3% 0_1ins228;759_1094del
11 human 100129842 ZNF737 zinc finger protein 737 XM_006722597.4 61.7% 53.8% (many diffs)
12 human 100129842 ZNF737 zinc finger protein 737 XM_011527599.3 61.7% 53.8% (many diffs)
13 human 100129842 ZNF737 zinc finger protein 737 XM_005259697.4 61.6% 53.7% (many diffs)
14 human 100129842 ZNF737 zinc finger protein 737 XM_011527598.3 61.6% 53.7% (many diffs)
15 human 646864 ZNF723 zinc finger protein 723 XM_024451653.1 60.7% 48.2% (many diffs)
16 human 10793 ZNF273 zinc finger protein 273 NM_021148.2 58.4% 48.5% (many diffs)
17 human 7617 ZNF66 zinc finger protein 66 NM_001355197.2 58.4% 49.7% (many diffs)
18 human 148198 ZNF98 zinc finger protein 98 NM_001098626.2 57.9% 48% (many diffs)
19 human 171392 ZNF675 zinc finger protein 675 NM_138330.3 57.7% 48.3% (many diffs)
20 human 100129842 ZNF737 zinc finger protein 737 XM_017026116.1 57.5% 49.4% (many diffs)
21 human 7562 ZNF708 zinc finger protein 708 NM_021269.3 57.1% 47.7% (many diffs)
22 human 10793 ZNF273 zinc finger protein 273 XM_024446635.1 56.6% 46.4% (many diffs)
23 human 10793 ZNF273 zinc finger protein 273 XM_024446636.1 56.6% 46.4% (many diffs)
24 human 10793 ZNF273 zinc finger protein 273 XM_024446637.1 56.6% 46.4% (many diffs)
25 human 10793 ZNF273 zinc finger protein 273 XM_024446638.1 56.6% 46.4% (many diffs)
26 human 10793 ZNF273 zinc finger protein 273 XM_024446639.1 56.6% 46.4% (many diffs)
27 human 10793 ZNF273 zinc finger protein 273 XM_024446640.1 56.6% 46.4% (many diffs)
28 human 10793 ZNF273 zinc finger protein 273 XM_024446641.1 56.6% 46.4% (many diffs)
29 human 7562 ZNF708 zinc finger protein 708 XM_017027201.1 56.2% 46.8% (many diffs)
30 human 7639 ZNF85 zinc finger protein 85 NM_003429.5 55.7% 47.5% (many diffs)
31 human 7643 ZNF90 zinc finger protein 90 NM_007138.2 55.1% 46.2% (many diffs)
32 human 7562 ZNF708 zinc finger protein 708 XM_017027204.2 54.8% 45.7% (many diffs)
33 human 81931 ZNF93 zinc finger protein 93 NM_031218.4 54.1% 45% (many diffs)
34 human 57615 ZNF492 zinc finger protein 492 NM_020855.3 54.1% 44.7% (many diffs)
35 human 440519 ZNF724 zinc finger protein 724 NM_001355404.2 53.9% 45.7% (many diffs)
36 human 440519 ZNF724 zinc finger protein 724 NM_001355406.2 53% 44.9% (many diffs)
37 human 7639 ZNF85 zinc finger protein 85 NM_001256171.1 53% 45.1% (many diffs)
38 human 7639 ZNF85 zinc finger protein 85 XM_011528263.2 51.7% 44.2% (many diffs)
39 human 168374 ZNF92 zinc finger protein 92 NM_001287532.1 51.7% 43.1% (many diffs)
40 human 100129842 ZNF737 zinc finger protein 737 XM_017026117.2 50.6% 42.5% (many diffs)
41 human 7562 ZNF708 zinc finger protein 708 NM_001297560.1 47.5% 38.5% (many diffs)
42 human 7562 ZNF708 zinc finger protein 708 NM_001297561.1 47.5% 38.5% (many diffs)
43 human 100129842 ZNF737 zinc finger protein 737 XR_001753570.2 47.4% (many diffs)
44 human 7562 ZNF708 zinc finger protein 708 XM_017027202.2 45.8% 36.9% (many diffs)
45 human 7562 ZNF708 zinc finger protein 708 XM_017027203.2 45.8% 36.9% (many diffs)
46 human 105372319 LOC105372319 zinc finger protein 430-like XM_017027571.1 41.7% 27.9% (many diffs)
47 human 7594 ZNF43 zinc finger protein 43 NM_003423.4 41.4% 33.6% (many diffs)
48 human 7594 ZNF43 zinc finger protein 43 NM_001256653.1 40.9% 33.2% (many diffs)
49 human 7594 ZNF43 zinc finger protein 43 NM_001256648.2 40.7% 33% (many diffs)
50 human 7594 ZNF43 zinc finger protein 43 NM_001256649.2 40.7% 33% (many diffs)
51 human 7594 ZNF43 zinc finger protein 43 NM_001256650.2 40.7% 33% (many diffs)
52 human 7594 ZNF43 zinc finger protein 43 XM_011528257.3 40.7% 33% (many diffs)
53 human 7594 ZNF43 zinc finger protein 43 XM_011528259.3 40.7% 33% (many diffs)
54 human 7594 ZNF43 zinc finger protein 43 XM_017027207.2 40.7% 33% (many diffs)
55 human 7594 ZNF43 zinc finger protein 43 XM_017027208.2 40.7% 33% (many diffs)
56 human 7594 ZNF43 zinc finger protein 43 XM_017027209.2 40.7% 33% (many diffs)
57 human 7594 ZNF43 zinc finger protein 43 XM_017027210.2 40.7% 33% (many diffs)
58 human 7594 ZNF43 zinc finger protein 43 XM_017027211.2 40.7% 33% (many diffs)
59 human 7594 ZNF43 zinc finger protein 43 XM_017027212.2 40.7% 33% (many diffs)
60 human 7594 ZNF43 zinc finger protein 43 XM_017027213.2 40.7% 33% (many diffs)
61 human 7594 ZNF43 zinc finger protein 43 XM_017027214.2 40.7% 33% (many diffs)
62 human 7594 ZNF43 zinc finger protein 43 XM_017027215.2 40.7% 33% (many diffs)
63 human 7594 ZNF43 zinc finger protein 43 XM_017027216.2 40.7% 33% (many diffs)
64 human 7594 ZNF43 zinc finger protein 43 NM_001256651.2 34.3% 27.3% (many diffs)
65 human 7594 ZNF43 zinc finger protein 43 NM_001256654.2 34.3% 27.3% (many diffs)
66 human 7643 ZNF90 zinc finger protein 90 XR_001753753.2 24.1% (many diffs)
67 human 10793 ZNF273 zinc finger protein 273 NR_003099.1 22.6% (many diffs)
68 human 199777 ZNF626 zinc finger protein 626 NM_145297.3 21.3% 17.7% (many diffs)
69 human 440519 ZNF724 zinc finger protein 724 XM_024451521.1 17.6% 16.2% (many diffs)
70 human 51427 ZNF107 zinc finger protein 107 XM_024446791.1 17% 14.9% (many diffs)
71 human 7697 ZNF138 zinc finger protein 138 NM_001271637.2 14.1% 11.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1230
ORF length:
1161
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gggaccattg caatttagag atgtggccat agaattctct ctggaggagt
121ggcattgcct ggacactgca cagcggaatt tatataggga tgtgatgtta gagaactaca
181gaaacttggt cttccttggt attgttgtct ctaagccaga cctggttacc tgtctggagc
241aaggaaaaaa acctttaact atggaaagac atgagatgat tgccaaaccc ccagttatga
301gttctcattt tgcccaagac ctttggccag agaacataca aaattctttc caaataggga
361tgctgagaag atatgaagaa tgcagacatg acaatttaca gttaaaaaaa ggctgtaaaa
421gcgtgggtga gcataaggtg cacaaaggag gttataatgg acttaaccaa tgtttgacaa
481ctacccagaa agaaatattt caatgtgata aatatggaaa agtctttcat aagttttcaa
541attcaaacac atataagaca agacatactg gaataaatct tttcaaatgt ataatatgtg
601gcaaagcttt taaacggtcc tcaaccctta ctacacataa gaaaattcat actggagaga
661aaccttacag atgtgaagaa tgtggcaaag cttttaacca atctgcaaac cttactacac
721ataagagaat tcataccgga gagaaaccct acagatgtga agaatgtggc aaagccttta
781agcagtcctc aaaCCTTACT ACACATAAGA AAATTCATAC TGGAGAGAAA CCCTACAAAT
841GTGAAGAATG TGGCAAAGCC TTCAACCGAT CCACAGACCT TACTACACAT AAGATAGTTC
901ATACTGGAGA GAAACCCTAC AAATGTGAAG AATGTGGCAA AGCCTTTAAG CACCCCTCAC
961ACGTTACCAC ACATAAGAAA ATTCATACTA GAGGGAAACC CTACAACTGT GAAGAATGTG
1021GCAAATCCTT TAAGCACTGC TCTAACCTTA CTATACATAA GAGAATTCAT ACTGGAGAGA
1081AACCTTACAA ATGTGAAGAA TGTGGCAAAG CTTTTAACTG GTCCTCAGAC CTTAATAAAC
1141ATAAGAAAAT TCATATTGAA CGAAAACCCT ACATAGTGAA GAATGTGACA GATCTTTTAA
1201ATGTTCCTCC ACTTTTAATT AGCATAAGAT TGCCAACTTT CTTGTACAAA GTGGTTGATA
1261TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
1321CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATACCC
1381GCTTGGCTTT AAAAACCAAA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1441tgaaagatt

Download FASTA (ORF) (Full)