Construct: ORF TRCN0000478136

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000526.1_s317c1
Derived from:
ccsbBroadEn_09302
DNA Barcode:
TCTGGATTCCTTTAAAAGGATTTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF486 (90649)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478136
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 90649 ZNF486 zinc finger protein 486 NM_052852.4 99.9% 99.7% 413G>A
2 human 440515 ZNF506 zinc finger protein 506 NM_001099269.3 79.5% 69.4% (many diffs)
3 human 56242 ZNF253 zinc finger protein 253 NM_021047.3 77% 65.4% (many diffs)
4 human 440515 ZNF506 zinc finger protein 506 NM_001145404.2 73.4% 63.4% (many diffs)
5 human 199777 ZNF626 zinc finger protein 626 NM_001076675.3 73.1% 62.3% (many diffs)
6 human 100129842 ZNF737 zinc finger protein 737 NM_001159293.2 72.4% 63.3% (many diffs)
7 human 100129842 ZNF737 zinc finger protein 737 XM_006722597.4 70.6% 61.7% (many diffs)
8 human 100129842 ZNF737 zinc finger protein 737 XM_011527599.3 70.6% 61.7% (many diffs)
9 human 100129842 ZNF737 zinc finger protein 737 XM_005259697.4 70.5% 61.6% (many diffs)
10 human 100129842 ZNF737 zinc finger protein 737 XM_011527598.3 70.5% 61.6% (many diffs)
11 human 10793 ZNF273 zinc finger protein 273 NM_021148.2 68.9% 57.6% (many diffs)
12 human 7617 ZNF66 zinc finger protein 66 NM_001355197.2 67.6% 58.4% (many diffs)
13 human 100129842 ZNF737 zinc finger protein 737 XM_017026116.1 67.1% 58.3% (many diffs)
14 human 7643 ZNF90 zinc finger protein 90 NM_007138.2 66.1% 56.2% (many diffs)
15 human 171392 ZNF675 zinc finger protein 675 NM_138330.3 65.9% 56% (many diffs)
16 human 10793 ZNF273 zinc finger protein 273 XM_024446635.1 65.4% 54.6% (many diffs)
17 human 10793 ZNF273 zinc finger protein 273 XM_024446636.1 65.4% 54.6% (many diffs)
18 human 10793 ZNF273 zinc finger protein 273 XM_024446637.1 65.4% 54.6% (many diffs)
19 human 10793 ZNF273 zinc finger protein 273 XM_024446638.1 65.4% 54.6% (many diffs)
20 human 10793 ZNF273 zinc finger protein 273 XM_024446639.1 65.4% 54.6% (many diffs)
21 human 10793 ZNF273 zinc finger protein 273 XM_024446640.1 65.4% 54.6% (many diffs)
22 human 10793 ZNF273 zinc finger protein 273 XM_024446641.1 65.4% 54.6% (many diffs)
23 human 56242 ZNF253 zinc finger protein 253 NM_001331133.1 65.4% 54.4% (many diffs)
24 human 7562 ZNF708 zinc finger protein 708 XM_017027201.1 64.7% 55.6% (many diffs)
25 human 7639 ZNF85 zinc finger protein 85 NM_003429.5 64.4% 54.8% (many diffs)
26 human 56242 ZNF253 zinc finger protein 253 NM_001331134.1 63.2% 52.2% (many diffs)
27 human 81931 ZNF93 zinc finger protein 93 NM_031218.4 62% 52.9% (many diffs)
28 human 7639 ZNF85 zinc finger protein 85 NM_001256171.1 61.4% 52% (many diffs)
29 human 100129842 ZNF737 zinc finger protein 737 XM_017026117.2 60.1% 51.6% (many diffs)
30 human 7639 ZNF85 zinc finger protein 85 XM_011528263.2 60% 51% (many diffs)
31 human 100129842 ZNF737 zinc finger protein 737 XR_001753570.2 56.2% (many diffs)
32 human 7608 ZNF56 zinc finger protein 56 NM_001355194.2 38% 26.6% (many diffs)
33 human 664701 ZNF826P zinc finger protein 826, ps... NR_036455.1 35.3% (many diffs)
34 human 105372319 LOC105372319 zinc finger protein 430-like XM_017027571.1 34.2% 22.4% (many diffs)
35 human 7643 ZNF90 zinc finger protein 90 XR_001753753.2 28.8% (many diffs)
36 human 10793 ZNF273 zinc finger protein 273 NR_003099.1 26.9% (many diffs)
37 human 199777 ZNF626 zinc finger protein 626 NM_145297.3 17.8% 15% (many diffs)
38 human 440519 ZNF724 zinc finger protein 724 XM_024451521.1 14.6% 12.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1458
ORF length:
1389
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gccgggaccc cttagaagcc tagaaatgga atcattgcaa tttagagatg
121tggctgtaga attctctctg gaggagtggc attgcctgga cactgcacag cagaatttat
181atagggatgt gatgttagag aactacagac acctggtctt ccttggtatt attgtctcta
241agccagacct gatcacctgt ctggagcaag gaataaaacc tctgactatg aagagacatg
301agatgattgc caaaccccca gttgtgtgtt ctcattttgc ccaagacctt tggccagagc
361agagcataaa agattcttac caaaaagtga tactgagaaa atttgaaaaa tgtggacatg
421gcaatttaca ctttaaaaaa ggctgtgaaa gtgtggatga gtgtaagtta cacaaaagag
481attataatgg acttaaccaa tgtttgacaa ctacccagag caaaatattt caatgtggta
541aatatgtgaa agtctttcat caattttcaa attcaaagag acataaaaga agacatactg
601aaaaaaaacc tttgaaatat atagaaggtg acaaagcttt taaccagtcc tcaacccata
661ctacacataa aaaaattgat actggagaga aaccatacaa atgtgaagaa tgtggcaaag
721ccttcaaccg gtcctcacac cttactacac ataagataac tcatactaga gagaaaccct
781acaaatgtga agaatgtggc aaagtcttta agtacttctc tagctttact acacataaga
841aaattcatag tggagagaaa ccctacattt gtgaagaatg tggcaaagcc tttatgtacc
901cctataccct tactacacat aagataatcc atactggaga gcaaccctac aaatgtaaag
961aatgtgacaa agcttttaac catcctgcaa ctctttcttc acataagaaa attcatactg
1021gagagaaacc gtacacgtgt gataaatgtg gcaaagcctt tatttcatcc tcgatcctta
1081gtaaacatga gaagattcat acgggagaga aaccctacaa atgtgaagaa tgtggcaaag
1141ccTTCACCCG CTCCTCACAC CTTACTATGC ATAAGATAAT TCATACTGGA GAGAAACCAT
1201ACAAATGTGA AGAATGTGGC AAAGCCTTTA CATGGTCTGC AGGCCTCCAT AAACATAGGA
1261GAACTCATAC TGGAGAGAAA CCCTACAAAT GTGAAGAATG TGGCAAAGCG TATACTACAT
1321CCTCAAATCT AACTGAACAT AAGACAACTC ATACTGGAGA GAAACCTTAC AAATGTAAAG
1381AATGTGGCAA AGCTTTTAAC TGGTCCTCAG ACCTTAATAA ACATAAGAGA ATTCATATTG
1441GACAGAAACC AAGAACGTTG CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
1501TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
1561GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGATCTGGAT TCCTTTAAAA
1621GGATTTCACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)