Construct: ORF TRCN0000470961

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016439.1_s317c1
Derived from:
ccsbBroadEn_12974
DNA Barcode:
GAATTATTCATAGACCCCCAATAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
INTS4 (92105)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470961
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 92105 INTS4 integrator complex subunit 4 XM_011545353.3 98.7% 98.8% 1515_1533delinsG
2 human 92105 INTS4 integrator complex subunit 4 XR_001748041.2 69.4% 1_24del;1540_2182del
3 human 92105 INTS4 integrator complex subunit 4 XR_002957209.1 59.2% 1_24del;1540_2555del
4 human 92105 INTS4 integrator complex subunit 4 XM_017018560.2 55.4% 55.4% 1516_2730del
5 human 92105 INTS4 integrator complex subunit 4 NM_033547.4 52.4% 52.4% 1516_2889del
6 human 92105 INTS4 integrator complex subunit 4 XR_001748037.2 49.6% 1_24del;1540_3054del
7 human 92105 INTS4 integrator complex subunit 4 XR_001748036.2 48.6% 1_24del;1540_3114del
8 human 92105 INTS4 integrator complex subunit 4 XR_001748039.2 46.1% 1_24del;1540_3286del
9 human 92105 INTS4 integrator complex subunit 4 XR_001748040.2 44.9% 1_24del;1540_3372del
10 human 92105 INTS4 integrator complex subunit 4 XM_011545352.2 41% 41% 0_1ins330;1186_2559del
11 human 644619 INTS4P2 integrator complex subunit ... NR_027392.2 35% (many diffs)
12 human 92105 INTS4 integrator complex subunit 4 XR_002957208.1 28.8% 1_24del;1540_5259del
13 human 285905 INTS4P1 integrator complex subunit ... NR_146905.1 25.9% (many diffs)
14 human 285905 INTS4P1 integrator complex subunit ... NR_146906.1 23.8% (many diffs)
15 mouse 101861 Ints4 integrator complex subunit 4 NM_027256.2 47.9% 51.5% (many diffs)
16 mouse 101861 Ints4 integrator complex subunit 4 XM_006507179.3 47.9% 51.6% (many diffs)
17 mouse 101861 Ints4 integrator complex subunit 4 XM_006507180.1 47% 50.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1581
ORF length:
1515
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ggcgcacctt aagaagcggg tttatgagga attcacgaaa gtggttcagc
121cacaggagga aattgctact aagaaactcc gactaacaaa accaagtaaa tctgcagcac
181tccacataga tctgtgtaaa gctacctccc cagcagatgc tttgcaatac ttgctccagt
241ttgccaggaa gcctgtcgag gcggaaagcg tagagggagt agtcaggatt ctcttggaac
301attattacaa ggagaatgat ccatctgtga gactgaaaat tgcatcattg ttgggtttat
361tatcaaagac agcaggattt tcaccagact gcattatgga tgatgccatc aacatcctgc
421agaatgaaaa gtctcatcaa gtcctagctc aactgctgga tactttgctt gcaattggca
481ctaagctacc agagaatcaa gctatccaaa tgcgattagt tgatgtggcc tgcaagcatc
541tgacagatac gtctcatggt gtaagaaata agtgcctgca gttacttggc aatcttggct
601ctttggagaa aagtgtcaca aaagatgcag aaggcctagc tgccagagat gtccagaaga
661ttatagggga ttacttcagt gaccaagacc cacgtgtcag aacagcagct ataaaagcca
721tgttgcagct ccatgaaaga ggactgaaat tacaccaaac aatttataat caggcctgta
781aattactctc tgatgactat gaacaagtgc gcagtgctgc agtccagctt atctgggtcg
841tcagtcagct ctatcctgaa agcattgtcc caattccttc ttctaatgaa gaaatacgct
901tagttgatga tgcgtttggc aaaatttgtc acatggtcag tgatggctct tgggtggttc
961gtgttcaggc agcaaaactg ttgggctcta tggagcaagt cagttctcat ttcttggagc
1021agacccttga caagaagctg atgtcagatc tgaggaggaa acgtactgca catgagcgtg
1081ccaaggaact ttacagttcg ggggagtttt ccagtggcag aaagtgggGA GATGATGCTC
1141CCAAGGAAGA AGTAGATACC GGGGCTGTGA ACTTGATTGA GTCAGGAGCT TGTGGAGCTT
1201TTGTTCATGG GTTGGAAGAT GAGATGTATG AGGTTCGTAT TGCTGCTGTG GAGGCCCTCT
1261GCATGTTGGC CCAGTCTTCA CCCTCTTTTG CTGAGAAGTG CCTTGATTTC CTAGTTGACA
1321TGTTCAACGA TGAAATTGAG GAAGTACGTC TGCAGTCTAT ACATACCATG AGAAAAATCT
1381CTAACAACAT CACCCTCCGA GAAGATCAGC TTGACACTGT CCTGGCTGTG CTAGAGGATT
1441CATCCAGAGA TATTCGAGAG GCTCTTCATG AACTCTTATG CTGTACTAAT GTTTCAACCA
1501AAGAAGGGAT TCATCTTGCA TTGGTGGAGC TGCTGAAAAA TTTAACCAAG TACCCTACTG
1561ATAGGGACTC CATATGGAAG TACCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
1621CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1681AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGAGAAT TATTCATAGA
1741CCCCCAATAG ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)

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