Construct: ORF TRCN0000479266

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017129.1_s317c1
Derived from:
ccsbBroadEn_11906
DNA Barcode:
TGCATCGCTTTAGCTGCGGAATCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SENP1 (29843)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479266
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 29843 SENP1 SUMO specific peptidase 1 NM_001267594.2 99.8% 99.6% 504T>C;577A>G;1049A>G
2 human 29843 SENP1 SUMO specific peptidase 1 NM_001267595.2 99.8% 99.6% 504T>C;577A>G;1049A>G
3 human 29843 SENP1 SUMO specific peptidase 1 XM_017019233.2 98.7% 98.6% (many diffs)
4 human 29843 SENP1 SUMO specific peptidase 1 XM_017019234.2 98.7% 98.6% (many diffs)
5 human 29843 SENP1 SUMO specific peptidase 1 XM_017019235.1 98.7% 98.6% (many diffs)
6 human 29843 SENP1 SUMO specific peptidase 1 XM_017019236.1 97.8% 97.5% (many diffs)
7 human 29843 SENP1 SUMO specific peptidase 1 XM_017019237.1 97.8% 97.5% (many diffs)
8 human 29843 SENP1 SUMO specific peptidase 1 XM_011538245.3 97.3% 97.1% (many diffs)
9 human 29843 SENP1 SUMO specific peptidase 1 XM_017019231.2 95.1% 94.9% (many diffs)
10 human 29843 SENP1 SUMO specific peptidase 1 XM_017019232.1 95.1% 94.9% (many diffs)
11 human 29843 SENP1 SUMO specific peptidase 1 XM_006719361.3 95.1% 94.9% (many diffs)
12 human 29843 SENP1 SUMO specific peptidase 1 XM_011538244.3 93.1% 92.8% (many diffs)
13 human 29843 SENP1 SUMO specific peptidase 1 XM_017019229.2 90.8% 90.6% (many diffs)
14 human 29843 SENP1 SUMO specific peptidase 1 XM_017019230.2 89% 88.6% (many diffs)
15 human 29843 SENP1 SUMO specific peptidase 1 XM_006719362.2 69% 68.9% 0_1ins597;452A>G
16 human 29843 SENP1 SUMO specific peptidase 1 XM_017019238.2 69% 68.9% 0_1ins597;452A>G
17 human 29843 SENP1 SUMO specific peptidase 1 XM_017019239.2 69% 68.9% 0_1ins597;452A>G
18 human 29843 SENP1 SUMO specific peptidase 1 XM_017019240.2 67% 66.7% 0_1ins597;398_399ins39;413A>G
19 human 29843 SENP1 SUMO specific peptidase 1 NR_051992.2 38.5% (many diffs)
20 human 29843 SENP1 SUMO specific peptidase 1 NR_051991.1 37.5% (many diffs)
21 mouse 223870 Senp1 SUMO1/sentrin specific pept... NM_144851.5 86% 88% (many diffs)
22 mouse 223870 Senp1 SUMO1/sentrin specific pept... XM_006520882.3 82.7% 84.6% (many diffs)
23 mouse 223870 Senp1 SUMO1/sentrin specific pept... XM_006520881.2 81.9% 83.8% (many diffs)
24 mouse 223870 Senp1 SUMO1/sentrin specific pept... XM_006520880.2 79% 80.7% (many diffs)
25 mouse 223870 Senp1 SUMO1/sentrin specific pept... XM_006520884.3 68% 70.6% (many diffs)
26 mouse 223870 Senp1 SUMO1/sentrin specific pept... XM_006520883.2 65.4% 67.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2001
ORF length:
1932
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggatgatatt gctgatagga tgaggatgga tgctggagaa gtgactttag
121tgaaccacaa ctccgtattc aaaacccacc tcctgccaca aacaggtttt ccagaggacc
181agctttcgct ttctgaccag cagattttat cttccaggca aggacatttg gaccgatctt
241ttacatgttc cacaagaagt gcagcttata atccaagcta ttactcagat aatccttcct
301cagacagttt tcttggctca ggcgatttaa gaacctttgg ccagagtgca aatggccaat
361ggagaaattc taccccatcg tcaagctcat ctttacaaaa atcaagaaac agccgaagtc
421tttacctcga aacccgaaag acctcaagtg gattatcaaa cagttttgcg ggaaagtcaa
481accatcactg ccatgtatct gcatatgaaa aatcttttcc tattaaacct gttccaagtc
541catcttggag tggttcatgt cgtcgaagtc tcttgagccc caagaaaact cagaggcgac
601atgttagtac agcagaagag acagttcaag aagaagaaag agaggtttac agacagctgc
661tacagatggt cacagggaaa cagtttacta tagccaaacc caccacacat tttcctttac
721acctgtctcg atgtcttagt tccagtaaaa atactttgaa agactcactg tttaaaaatg
781gaaactcttg tgcatctcag atcattggct ctgatacttc atcatctgga tctgccagca
841ttttaactaa ccaggaacag ctgtcccaca gtgtatattc cctatcttct tataccccag
901atgttgcatt tggatccaaa gattctggta ctcttcatca tccccatcat caccactctg
961ttccacatca gccagataac ttagcagctt caaatacaca atctgaagga tcagactctg
1021tgattttact gaaagtgaaa gattcccaga ctccaactcc cagttctact ttcttccagg
1081cagagctgtg gatcaaagaa ttaactagtg tttatggttc tcgagcacga gaaagattgc
1141gccagattga agaacagaag gcattggcct tacagcttca aaaccagaga ttgcaggagc
1201gggaacattc agtacatgat tcagtagaac tacatcttcg tgtacctctt gaaaaggaga
1261ttcctgttac tgttgtccaa gaaacacaaa aaaaaggtca taaattaact gatagtgaag
1321atgaatttcc tgaaattaca gaggaaatgg agaaagaaat aaagaatgta tttcgtaatg
1381ggaatcagga tgaagttctc agtgaagcat ttcgcctgac cattacacgc aaagatattc
1441aaactctaaa ccatctgaat tggctcaatg atgagatcat caatttctac atgaatatgc
1501tgatggagcg aagtaaagag aagggcttgc caagtgtgca tgcatttaat acctttttct
1561tcactaaatt aaaaacggct ggttatcagg cagtgaaacg ttggacaaag aaagtagatg
1621tattttctgt tgacattctt ttggtgccca ttcacctggg agtacactgg tgtctagctg
1681ttgtggactt tagaaagaag aatattacct attacgactc catgggtggg ataaacaatg
1741aagcctgcag aatactcttg caataccTAA AGCAAGAAAG CATTGACAAG AAAAGGAAAG
1801AGTTTGACAC CAATGGCTGG CAGCTTTTCA GCAAGAAAAG CCAGGAGATT CCTCAGCAGA
1861TGAATGGAAG TGACTGTGGG ATGTTTGCCT GCAAATATGC TGACTGTATT ACCAAAGACA
1921GACCAATCAA CTTCACACAG CAACACATGC CATACTTCCG GAAGCGGATG GTCTGGGAGA
1981TCCTCCACCG AAAACTCTTG TTGCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
2041CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
2101AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGATGCA TCGCTTTAGC
2161TGCGGAATCT ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)