Construct: ORF TRCN0000479266
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017129.1_s317c1
- Derived from:
- ccsbBroadEn_11906
- DNA Barcode:
- TGCATCGCTTTAGCTGCGGAATCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SENP1 (29843)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479266
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 29843 | SENP1 | SUMO specific peptidase 1 | NM_001267594.2 | 99.8% | 99.6% | 504T>C;577A>G;1049A>G |
| 2 | human | 29843 | SENP1 | SUMO specific peptidase 1 | NM_001267595.2 | 99.8% | 99.6% | 504T>C;577A>G;1049A>G |
| 3 | human | 29843 | SENP1 | SUMO specific peptidase 1 | XM_017019233.2 | 98.7% | 98.6% | (many diffs) |
| 4 | human | 29843 | SENP1 | SUMO specific peptidase 1 | XM_017019234.2 | 98.7% | 98.6% | (many diffs) |
| 5 | human | 29843 | SENP1 | SUMO specific peptidase 1 | XM_017019235.1 | 98.7% | 98.6% | (many diffs) |
| 6 | human | 29843 | SENP1 | SUMO specific peptidase 1 | XM_017019236.1 | 97.8% | 97.5% | (many diffs) |
| 7 | human | 29843 | SENP1 | SUMO specific peptidase 1 | XM_017019237.1 | 97.8% | 97.5% | (many diffs) |
| 8 | human | 29843 | SENP1 | SUMO specific peptidase 1 | XM_011538245.3 | 97.3% | 97.1% | (many diffs) |
| 9 | human | 29843 | SENP1 | SUMO specific peptidase 1 | XM_017019231.2 | 95.1% | 94.9% | (many diffs) |
| 10 | human | 29843 | SENP1 | SUMO specific peptidase 1 | XM_017019232.1 | 95.1% | 94.9% | (many diffs) |
| 11 | human | 29843 | SENP1 | SUMO specific peptidase 1 | XM_006719361.3 | 95.1% | 94.9% | (many diffs) |
| 12 | human | 29843 | SENP1 | SUMO specific peptidase 1 | XM_011538244.3 | 93.1% | 92.8% | (many diffs) |
| 13 | human | 29843 | SENP1 | SUMO specific peptidase 1 | XM_017019229.2 | 90.8% | 90.6% | (many diffs) |
| 14 | human | 29843 | SENP1 | SUMO specific peptidase 1 | XM_017019230.2 | 89% | 88.6% | (many diffs) |
| 15 | human | 29843 | SENP1 | SUMO specific peptidase 1 | XM_006719362.2 | 69% | 68.9% | 0_1ins597;452A>G |
| 16 | human | 29843 | SENP1 | SUMO specific peptidase 1 | XM_017019238.2 | 69% | 68.9% | 0_1ins597;452A>G |
| 17 | human | 29843 | SENP1 | SUMO specific peptidase 1 | XM_017019239.2 | 69% | 68.9% | 0_1ins597;452A>G |
| 18 | human | 29843 | SENP1 | SUMO specific peptidase 1 | XM_017019240.2 | 67% | 66.7% | 0_1ins597;398_399ins39;413A>G |
| 19 | human | 29843 | SENP1 | SUMO specific peptidase 1 | NR_051992.2 | 38.5% | (many diffs) | |
| 20 | human | 29843 | SENP1 | SUMO specific peptidase 1 | NR_051991.1 | 37.5% | (many diffs) | |
| 21 | mouse | 223870 | Senp1 | SUMO1/sentrin specific pept... | NM_144851.5 | 86% | 88% | (many diffs) |
| 22 | mouse | 223870 | Senp1 | SUMO1/sentrin specific pept... | XM_006520882.3 | 82.7% | 84.6% | (many diffs) |
| 23 | mouse | 223870 | Senp1 | SUMO1/sentrin specific pept... | XM_006520881.2 | 81.9% | 83.8% | (many diffs) |
| 24 | mouse | 223870 | Senp1 | SUMO1/sentrin specific pept... | XM_006520880.2 | 79% | 80.7% | (many diffs) |
| 25 | mouse | 223870 | Senp1 | SUMO1/sentrin specific pept... | XM_006520884.3 | 68% | 70.6% | (many diffs) |
| 26 | mouse | 223870 | Senp1 | SUMO1/sentrin specific pept... | XM_006520883.2 | 65.4% | 67.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2001
- ORF length:
- 1932
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggatgatatt gctgatagga tgaggatgga tgctggagaa gtgactttag 121 tgaaccacaa ctccgtattc aaaacccacc tcctgccaca aacaggtttt ccagaggacc 181 agctttcgct ttctgaccag cagattttat cttccaggca aggacatttg gaccgatctt 241 ttacatgttc cacaagaagt gcagcttata atccaagcta ttactcagat aatccttcct 301 cagacagttt tcttggctca ggcgatttaa gaacctttgg ccagagtgca aatggccaat 361 ggagaaattc taccccatcg tcaagctcat ctttacaaaa atcaagaaac agccgaagtc 421 tttacctcga aacccgaaag acctcaagtg gattatcaaa cagttttgcg ggaaagtcaa 481 accatcactg ccatgtatct gcatatgaaa aatcttttcc tattaaacct gttccaagtc 541 catcttggag tggttcatgt cgtcgaagtc tcttgagccc caagaaaact cagaggcgac 601 atgttagtac agcagaagag acagttcaag aagaagaaag agaggtttac agacagctgc 661 tacagatggt cacagggaaa cagtttacta tagccaaacc caccacacat tttcctttac 721 acctgtctcg atgtcttagt tccagtaaaa atactttgaa agactcactg tttaaaaatg 781 gaaactcttg tgcatctcag atcattggct ctgatacttc atcatctgga tctgccagca 841 ttttaactaa ccaggaacag ctgtcccaca gtgtatattc cctatcttct tataccccag 901 atgttgcatt tggatccaaa gattctggta ctcttcatca tccccatcat caccactctg 961 ttccacatca gccagataac ttagcagctt caaatacaca atctgaagga tcagactctg 1021 tgattttact gaaagtgaaa gattcccaga ctccaactcc cagttctact ttcttccagg 1081 cagagctgtg gatcaaagaa ttaactagtg tttatggttc tcgagcacga gaaagattgc 1141 gccagattga agaacagaag gcattggcct tacagcttca aaaccagaga ttgcaggagc 1201 gggaacattc agtacatgat tcagtagaac tacatcttcg tgtacctctt gaaaaggaga 1261 ttcctgttac tgttgtccaa gaaacacaaa aaaaaggtca taaattaact gatagtgaag 1321 atgaatttcc tgaaattaca gaggaaatgg agaaagaaat aaagaatgta tttcgtaatg 1381 ggaatcagga tgaagttctc agtgaagcat ttcgcctgac cattacacgc aaagatattc 1441 aaactctaaa ccatctgaat tggctcaatg atgagatcat caatttctac atgaatatgc 1501 tgatggagcg aagtaaagag aagggcttgc caagtgtgca tgcatttaat acctttttct 1561 tcactaaatt aaaaacggct ggttatcagg cagtgaaacg ttggacaaag aaagtagatg 1621 tattttctgt tgacattctt ttggtgccca ttcacctggg agtacactgg tgtctagctg 1681 ttgtggactt tagaaagaag aatattacct attacgactc catgggtggg ataaacaatg 1741 aagcctgcag aatactcttg caataccTAA AGCAAGAAAG CATTGACAAG AAAAGGAAAG 1801 AGTTTGACAC CAATGGCTGG CAGCTTTTCA GCAAGAAAAG CCAGGAGATT CCTCAGCAGA 1861 TGAATGGAAG TGACTGTGGG ATGTTTGCCT GCAAATATGC TGACTGTATT ACCAAAGACA 1921 GACCAATCAA CTTCACACAG CAACACATGC CATACTTCCG GAAGCGGATG GTCTGGGAGA 1981 TCCTCCACCG AAAACTCTTG TTGCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC 2041 CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG 2101 AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGATGCA TCGCTTTAGC 2161 TGCGGAATCT ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt