Construct: ORF TRCN0000488732

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF021957.1_s317c1
DNA Barcode:
ACCAGACGAACGCTCAGACTTCCC
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
HDAC7 (51564)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488732
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51564 HDAC7 histone deacetylase 7 NM_001098416.4 100% 100%
2 human 51564 HDAC7 histone deacetylase 7 NM_015401.5 96.2% 96.2% 795_905del
3 human 51564 HDAC7 histone deacetylase 7 XM_011538480.1 95.4% 95% (many diffs)
4 human 51564 HDAC7 histone deacetylase 7 XM_024449018.1 95.2% 95% (many diffs)
5 human 51564 HDAC7 histone deacetylase 7 NM_001368046.1 94.9% 94.9% 460_501del;837_947del
6 human 51564 HDAC7 histone deacetylase 7 NM_001308090.2 94.5% 94.5% 18_19ins51;744_854del
7 human 51564 HDAC7 histone deacetylase 7 XM_017019455.1 93.1% 91.8% (many diffs)
8 human 51564 HDAC7 histone deacetylase 7 XM_011538481.1 92.3% 92.3% 0_1ins117;678_788del
9 human 51564 HDAC7 histone deacetylase 7 XM_011538482.1 92.3% 92.3% 0_1ins117;678_788del
10 human 51564 HDAC7 histone deacetylase 7 XM_011538478.1 92% 91.6% (many diffs)
11 human 51564 HDAC7 histone deacetylase 7 XR_001748761.1 63.4% (many diffs)
12 human 51564 HDAC7 histone deacetylase 7 NR_160435.1 58.8% (many diffs)
13 human 51564 HDAC7 histone deacetylase 7 XM_017019456.1 58.7% 58.2% (many diffs)
14 human 51564 HDAC7 histone deacetylase 7 NR_160436.1 58.6% (many diffs)
15 human 51564 HDAC7 histone deacetylase 7 XM_011538483.1 50.5% 50% (many diffs)
16 mouse 56233 Hdac7 histone deacetylase 7 NM_019572.3 84.1% 87% (many diffs)
17 mouse 56233 Hdac7 histone deacetylase 7 XM_011245699.1 82.6% 85.8% (many diffs)
18 mouse 56233 Hdac7 histone deacetylase 7 NM_001204278.1 82% 85.2% (many diffs)
19 mouse 56233 Hdac7 histone deacetylase 7 XM_006521203.2 80.9% 83.7% (many diffs)
20 mouse 56233 Hdac7 histone deacetylase 7 NM_001204279.1 80% 83% (many diffs)
21 mouse 56233 Hdac7 histone deacetylase 7 NM_001204276.1 79.5% 82.6% (many diffs)
22 mouse 56233 Hdac7 histone deacetylase 7 NM_001204277.1 79.5% 82.2% (many diffs)
23 mouse 56233 Hdac7 histone deacetylase 7 NM_001204275.1 79% 82% (many diffs)
24 mouse 56233 Hdac7 histone deacetylase 7 XM_006521205.2 79% 82% (many diffs)
25 mouse 56233 Hdac7 histone deacetylase 7 XM_006521207.3 79% 82% (many diffs)
26 mouse 56233 Hdac7 histone deacetylase 7 XM_006521208.3 79% 82% (many diffs)
27 mouse 56233 Hdac7 histone deacetylase 7 XM_006521209.2 79% 82% (many diffs)
28 mouse 56233 Hdac7 histone deacetylase 7 XM_006521210.2 79% 82% (many diffs)
29 mouse 56233 Hdac7 histone deacetylase 7 NM_001204281.1 77.8% 81.2% (many diffs)
30 mouse 56233 Hdac7 histone deacetylase 7 NM_001204280.1 77.5% 80.4% (many diffs)
31 mouse 56233 Hdac7 histone deacetylase 7 XR_875306.1 71.2% (many diffs)
32 mouse 56233 Hdac7 histone deacetylase 7 XR_875307.2 55.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2931
ORF length:
2862
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcaccat gcacagcccc ggcgctgatg ggacccaggt gagcccgggt gcccactact
121gcagccccac tggcgcaggc tgccccaggc cctgtgcaga cacaccaggc cctcagccgc
181agcccatgga cctgcgggtg ggccagcggc ccccagtgga gcccccacca gagcccacat
241tgctggccct gcagcgtccc cagcgcctgc accaccacct cttcctagca ggcctgcagc
301agcagcgctc ggtggagccc atgaggctct ccatggacac gccgatgccc gagttgcagg
361tgggacccca ggaacaagag ctgcggcagc ttctccacaa ggacaagagc aagcgaagtg
421ctgtagccag cagcgtggtc aagcagaagc tagcggaggt gattctgaaa aaacagcagg
481cggccctaga aagaacagtc catcccaaca gccccggcat tccctacaga accctggagc
541ccctggagac ggaaggagcc acccgctcca tgctcagcag ctttttgcct cctgttccca
601gcctgcccag tgacccccca gagcacttcc ctctgcgcaa gacagtctct gagcccaacc
661tgaagctgcg ctataagccc aagaagtccc tggagcggag gaagaatcca ctgctccgaa
721aggagagtgc gccccccagc ctccggcggc ggcccgcaga gaccctcgga gactcctccc
781caagtagtag cagcacgccc gcatcagggt gcagctcccc caatgacagc gagcacggcc
841ccaatcccat cctgggctcg gaggctgaca gtgaccgcag gacccatccg actctgggcc
901ctcgggggcc aatcctgggg agcccccaca ctcccctctt cctgccccat ggcttggagc
961ccgaggctgg gggcaccttg ccctctcgcc tgcagcccat tctcctcctg gacccctcag
1021gctctcatgc cccgctgctg actgtgcccg ggcttgggcc cttgcccttc cactttgccc
1081agtccttaat gaccaccgag cggctctctg ggtcaggcct ccactggcca ctgagccgga
1141ctcgctcaga gcccctgccc cccagtgcca ccgctccccc accgccgggc cccatgcagc
1201cccgcctgga gcagctcaaa actcacgtcc aggtgatcaa gaggtcagcc aagccgagtg
1261agaagccccg gctgcggcag ataccctcgg ctgaagacct ggagacagat ggcgggggac
1321cgggccaggt ggtggacgat ggcctggagc acagggagct gggccatggg cagcctgagg
1381ccagaggccc cgctcctctc cagcagcacc ctcaggtgtt gctctgggaa cagcagcgac
1441tggctgggcg gctcccccgg ggcagcaccg gggacactgt gctgcttcct ctggcccagg
1501gtgggcaccg gcctctgtcc cgggctcagt cttccccagc cgcacctgcc tcactgtcag
1561ccccagagcc tgccagccag gcccgagtcc tctccagctc agagacccct gccaggaccc
1621tgcccttcac cacagggctg atctatgact cggtcatgct gaagcaccag tgctcctgcg
1681gtgacaacag caggcacccg gagcacgccg gccgcatcca gagcatctgg tcccggctgc
1741aggagcgggg gctccggagc cagtgtgagt gtctccgagg ccggaaggcc tccctggaag
1801agctgcagtc ggtccactct gagcggcacg tgctcctcta cggcaccaac ccgctcagcc
1861gcctcaaact ggacaacggg aagctggcag ggctcctggc acagcggatg tttgtgatgc
1921tgccctgtgg tggggttggg gtggacactg acaccatctg gaatgagctt cattcctcca
1981atgcagcccg ctgggccgct ggcagtgtca ctgacctcgc cttcaaagtg gcttctcgtg
2041agctaaagaa tggtttcgct gtggtgcggc ccccaggaca ccatgcagat cattcaacag
2101ccatgggctt ctgcttcttc aactcagtgg ccatcgcctg ccggcagctg caacagcaga
2161gcaaggccag caagatcctc attgtagact gggacgtgca ccatggcaac ggcacccagc
2221aaaccttcta ccaagacccc agtgtgctct acatctccct gcatcgccat gacgacggca
2281acttcttccc ggggagtggg gctgtggatg aggtaggggc tggcagcggt gagggcttca
2341atgtcaatgt ggcctgggct ggaggtctgg acccccccat gggggatcct gagtacctgg
2401ctgctttcag gatagtcgtg atgcccatcg cccgagagtt ctctccagac ctagtcctgg
2461tgtctgctgg atttgatgct gctgagggtc acccggcccc actgggtggc taccatgttt
2521ctgccaaatg ttttggatac atgacgcagc aactgatgaa cctggcagga ggcgcagtgg
2581tgctggcctt ggagggtggc catgacctca cagccatctg tgacgccTCT GAGGCCTGTG
2641TGGCTGCTCT TCTGGGTAAC AGGGTGGATC CCCTTTCAGA AGAAGGCTGG AAACAGAAAC
2701CCAACCTCAA TGCCATCCGC TCTCTGGAGG CCGTGATCCG GGTGCACAGT AAATACTGGG
2761GCTGCATGCA GCGCCTGGCC TCCTGTCCAG ACTCCTGGGT GCCTAGAGTG CCAGGGGCTG
2821ACAAAGAAGA AGTGGAGGCA GTGACCGCAC TGGCGTCCCT CTCTGTGGGC ATCCTGGCTG
2881AAGATAGGCC CTCGGAGCAG CTGGTGGAGG AGGAAGAACC TATGAATCTC TAAGACCCAG
2941CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
3001ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
3061TATCTTGTGG AAAGGACGAA CCAGACGAAC GCTCAGACTT CCCACGCGTT AAGTCgacaa
3121tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)

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