Construct: ORF ccsbBroad304_12570

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018276.1_s304c1, BRDN0000409000
Derived from:
ccsbBroadEn_12570
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SAP130 (79595)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12570
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79595 SAP130 Sin3A associated protein 130 NM_001330303.2 67.1% 67.1% 1_1008del
2 human 79595 SAP130 Sin3A associated protein 130 NM_001330300.2 67% 67% 1_1008del;1777_1778insCAG
3 human 79595 SAP130 Sin3A associated protein 130 NM_024545.4 65.4% 65.4% 1_1086del
4 human 79595 SAP130 Sin3A associated protein 130 XM_006712749.3 65.3% 65.3% 1_1086del;1855_1856insCAG
5 human 79595 SAP130 Sin3A associated protein 130 NM_001330299.2 64.9% 64.9% 1_1005del;1954_2058del
6 human 79595 SAP130 Sin3A associated protein 130 NM_001330301.2 64.9% 64.9% 1_1008del;1957_2061del
7 human 79595 SAP130 Sin3A associated protein 130 XM_005263769.3 64.9% 64.9% 1_1008del;1957_2061del
8 human 79595 SAP130 Sin3A associated protein 130 NM_001330302.2 64.8% 64.8% 1_1008del;1777_1778insCAG;1954_2058del
9 human 79595 SAP130 Sin3A associated protein 130 XM_005263767.3 63.4% 63.4% 1_1083del;2032_2136del
10 human 79595 SAP130 Sin3A associated protein 130 NM_001145928.1 63.3% 63.3% 1_1086del;2035_2139del
11 human 79595 SAP130 Sin3A associated protein 130 XM_006712748.3 63.2% 63.2% 1_1086del;1855_1856insCAG;2032_2136del
12 human 79595 SAP130 Sin3A associated protein 130 XR_923026.3 45.1% (many diffs)
13 mouse 269003 Sap130 Sin3A associated protein XM_017317912.1 58.3% 62.4% (many diffs)
14 mouse 269003 Sap130 Sin3A associated protein XM_006525953.1 58% 62% (many diffs)
15 mouse 269003 Sap130 Sin3A associated protein XM_006525951.2 57.2% 61.2% (many diffs)
16 mouse 269003 Sap130 Sin3A associated protein XM_006525952.3 57.2% 61.2% (many diffs)
17 mouse 269003 Sap130 Sin3A associated protein XM_006525954.3 57.2% 61.2% (many diffs)
18 mouse 269003 Sap130 Sin3A associated protein NM_172965.2 57.1% 61.1% (many diffs)
19 mouse 269003 Sap130 Sin3A associated protein XM_006525949.1 56.1% 60% (many diffs)
20 mouse 269003 Sap130 Sin3A associated protein XM_006525950.2 56% 59.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2124
ORF length:
2058
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc tcagaaaaca atcttcagta ctggcacgcc agtggctgca gccacagtag
121cacctatttt ggcaaccaac accattcctt cagcgaccac agctggatct gtgtcacaca
181cgcaagctcc cacaagtacc attgttacca tgacagtacc ctcccattcc tcccatgcta
241ctgctgtgac cacctcaaac atcccagtcg ccaaggtggt gccccagcag atcacgcaca
301cttctcctcg gatccagcca gactaccctg ccgagaggag tagcctgatt cccatctccg
361gacatcgggc ctctcccaat cctgtggcca tggaaacccg aagtgacaac agaccgtctg
421ttcccgttca gttccaatat tttttgccaa cttacccccc ttctgcatac ccactggcgg
481cacataccta caccccaatc accagttccg tgtccactat ccgacagtat ccagtttcag
541ctcaggctcc aaactctgcc atcacagctc agactggtgt tggggtagcg tctaccgtcc
601acctaaaccc catgcagttg atgacagtgg atgcatcgca tgctcgacat attcaaggga
661tccagccagc acccatcagt acccagggta tccagccggc ccccattggg accccaggga
721tacagcctgc accacttggc acacagggaa ttcactcagc aaccccaatc aacacacaag
781ggcttcagcc tgcacctatg ggtactcagc agcctcagcc tgaaggaaag acttcagcag
841tggtgttggc agatggagcc acaattgtgg ccaaccctat tagcaatcca ttcagtgctg
901ctccagcagc aacaaccgtg gtgcagaccc acagccagag tgctagcacc aacgctcccg
961cccagggctc atcgccacgg ccaagcatac tccggaagaa acctgccaca gatggtgcca
1021aacccaagtc tgaaatccac gtgtctatgg ccactccggt cactgtgtcc atggagactg
1081tatccaatca aaataatgat cagcctacca ttgccgtccc tccaactgcc cagcagcccc
1141caccgaccat tccaactatg attgcagcag ccagtccccc gtcacaacca gccgttgccc
1201tttcaaccat tcctggagcg gtccccatca ctccacccat caccaccatt gcagctgcac
1261cacctccatc agtcactgtg ggtggcagtc tttcctccgt cttgggccct cccgttcctg
1321aaattaaagt gaaagaagaa gtagaaccaa tggatatcat gaggccagtt tctgcagttc
1381ctccactggc taccaacact gtgtctccat ctcttgcatt gctggcaaac aacttgtcca
1441tgcctacaag tgacctacca cctggtgcct ccccaaggaa aaagcctcga aagcaacagc
1501atgtgatctc aacagaagaa ggtgacatga tggagacaaa cagcactgat gatgagaagt
1561ccactgccaa gagtcttctg gtgaaggctg agaagcgcaa gtctcctccc aaggagtata
1621ttgatgagga aggtgtgaga tatgtcccag tgcgtccaag accccccatt actttgcttc
1681gtcactatcg gaacccctgg aaagctgctt accaccactt tcagaggtac agtgacgtcc
1741gggtcaaaga ggagaagaaa gctatgctgc aggaaatagc taatcagaaa ggagtatcct
1801gtcgtgctca aggctggaaa gtccacctct gtgctgccca gttactacag ctgacgaatc
1861tagaacatga tgtctatgaa agacttacta acctgcagga agggattatc ccaaagaaaa
1921aagcagcaac agatgatgat ctccaccgaa taaacgaact gatacaggga aatatgcaga
1981ggtgtaaact tgtgatggat caaatcagtg aagccagaga ctccatgctt aaggttttag
2041atcataaaga ccgtgtcctg aagctgctta acaagaacgg gactgtcaaa aaagtgtcca
2101aattgaagcg aaaggaaaaa gtctacccaa ctttcttgta caaagtggtt ggtaagccta
2161tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
2221gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)