Construct: ORF ccsbBroad304_00195

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012338.1_s304c1, BRDN0000404468
Derived from:
ccsbBroadEn_00195
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LDLRAD4 (753)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_00195
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 753 LDLRAD4 low density lipoprotein rec... NM_181482.5 100% 100%
2 human 753 LDLRAD4 low density lipoprotein rec... XM_024451259.1 100% 100%
3 human 753 LDLRAD4 low density lipoprotein rec... NM_181481.4 94.1% 94.1% 335_388del
4 human 753 LDLRAD4 low density lipoprotein rec... XM_005258140.1 94.1% 94.1% 335_388del
5 human 753 LDLRAD4 low density lipoprotein rec... XM_006722353.1 94.1% 94.1% 335_388del
6 human 753 LDLRAD4 low density lipoprotein rec... XM_006722354.1 94.1% 94.1% 335_388del
7 human 753 LDLRAD4 low density lipoprotein rec... XM_024451248.1 94.1% 94.1% 335_388del
8 human 753 LDLRAD4 low density lipoprotein rec... XM_024451249.1 94.1% 94.1% 335_388del
9 human 753 LDLRAD4 low density lipoprotein rec... XM_024451250.1 94.1% 94.1% 335_388del
10 human 753 LDLRAD4 low density lipoprotein rec... XM_024451251.1 94.1% 94.1% 335_388del
11 human 753 LDLRAD4 low density lipoprotein rec... XM_024451252.1 94.1% 94.1% 335_388del
12 human 753 LDLRAD4 low density lipoprotein rec... XM_024451253.1 94.1% 94.1% 335_388del
13 human 753 LDLRAD4 low density lipoprotein rec... XM_024451254.1 94.1% 94.1% 335_388del
14 human 753 LDLRAD4 low density lipoprotein rec... XM_024451255.1 94.1% 94.1% 335_388del
15 human 753 LDLRAD4 low density lipoprotein rec... XM_024451256.1 94.1% 94.1% 335_388del
16 human 753 LDLRAD4 low density lipoprotein rec... XM_024451257.1 94.1% 94.1% 335_388del
17 human 753 LDLRAD4 low density lipoprotein rec... XM_024451258.1 94.1% 94.1% 335_388del
18 human 753 LDLRAD4 low density lipoprotein rec... XM_017025962.1 84.6% 71.6% (many diffs)
19 human 753 LDLRAD4 low density lipoprotein rec... XM_024451260.1 83.6% 83.3% 40_41ins141
20 human 753 LDLRAD4 low density lipoprotein rec... NM_001003675.3 82.2% 80% (many diffs)
21 human 753 LDLRAD4 low density lipoprotein rec... XM_017025961.1 79.8% 67.8% (many diffs)
22 human 753 LDLRAD4 low density lipoprotein rec... XM_011525737.1 78.7% 78.4% 40_41ins141;194_247del
23 human 753 LDLRAD4 low density lipoprotein rec... XM_017025963.2 78.7% 78.4% 40_41ins141;194_247del
24 human 753 LDLRAD4 low density lipoprotein rec... XM_017025964.1 78.7% 78.4% 40_41ins141;194_247del
25 human 753 LDLRAD4 low density lipoprotein rec... NM_001003674.3 77.4% 75.3% (many diffs)
26 human 753 LDLRAD4 low density lipoprotein rec... XM_017025972.1 73.2% 73.2% 0_1ins231
27 human 753 LDLRAD4 low density lipoprotein rec... NM_001276249.1 68.9% 68.9% 0_1ins231;104_157del
28 human 753 LDLRAD4 low density lipoprotein rec... XM_011525738.1 68.9% 68.9% 0_1ins231;104_157del
29 human 753 LDLRAD4 low density lipoprotein rec... XM_017025965.1 68.9% 68.9% 0_1ins231;104_157del
30 human 753 LDLRAD4 low density lipoprotein rec... XM_017025966.1 68.9% 68.9% 0_1ins231;104_157del
31 human 753 LDLRAD4 low density lipoprotein rec... XM_017025967.1 68.9% 68.9% 0_1ins231;104_157del
32 human 753 LDLRAD4 low density lipoprotein rec... XM_017025968.1 68.9% 68.9% 0_1ins231;104_157del
33 human 753 LDLRAD4 low density lipoprotein rec... XM_017025969.1 68.9% 68.9% 0_1ins231;104_157del
34 human 753 LDLRAD4 low density lipoprotein rec... XM_017025970.1 68.9% 68.9% 0_1ins231;104_157del
35 human 753 LDLRAD4 low density lipoprotein rec... XM_017025971.1 68.9% 68.9% 0_1ins231;104_157del
36 human 753 LDLRAD4 low density lipoprotein rec... NM_001276251.1 67.5% 63.1% (many diffs)
37 mouse 52662 Ldlrad4 low density lipoprotein rec... NM_172631.3 84.4% 85.9% (many diffs)
38 mouse 52662 Ldlrad4 low density lipoprotein rec... XM_006526085.3 84.4% 85.9% (many diffs)
39 mouse 52662 Ldlrad4 low density lipoprotein rec... XM_006526086.3 84.4% 85.9% (many diffs)
40 mouse 52662 Ldlrad4 low density lipoprotein rec... XM_006526087.3 84.4% 85.9% (many diffs)
41 mouse 52662 Ldlrad4 low density lipoprotein rec... XM_006526088.3 84.4% 85.9% (many diffs)
42 mouse 52662 Ldlrad4 low density lipoprotein rec... XM_006526089.3 84.4% 85.9% (many diffs)
43 mouse 52662 Ldlrad4 low density lipoprotein rec... XM_006526092.3 60.9% 61.1% (many diffs)
44 mouse 52662 Ldlrad4 low density lipoprotein rec... XM_011246973.2 60.9% 61.1% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
930
ORF length:
864
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc ggaagctggt tttcaggcca caaatgcttt cacagagtgc aaattcacct
121gcaccagtgg taaatgcttg tatcttggtt cgctggtctg taaccaacag aacgactgtg
181gggacaacag tgacgaagag aactgtctcc tggtgaccga gcacccgcct ccgggcatct
241tcaactcgga gctggagttc gcccaaatca tcatcatcgt cgtggtggtc acggtgatgg
301tggtggtcat cgtctgcctg ctgaaccact acaaagtctc cacgcggtcc ttcatcaacc
361gcccgaacca gagccggagg cgggaggacg ggctgccgca gatcatgcat gccccgcggt
421ccagggacag gttcacagcg ccgtccttca tccagaggga tcgcttcagc cgcttccagc
481ccacctaccc ctatgtgcag cacgagattg atcttcctcc caccatctcc ctgtccgacg
541gtgaagagcc acctccttac caggggccct gcaccctgca gctccgggac cctgaacagc
601agatggaact caaccgagag tccgtgaggg ccccacccaa ccgaaccata tttgacagtg
661atttaataga cattgctatg tatagcgggg gtccatgccc acccagcagc aactcgggca
721tcagtgcaag cacctgcagc agtaacggga ggatggaggg gccacccccc acatacagcg
781aggtgatggg ccaccaccca ggcgcctctt tcctccatca ccagcgcagc aacgcacaca
841ggggcagcag actgcagttt cagcagaaca atgcagagag cacaatagta cccatcaaag
901gcaaagatag gaagcctggg aacctggtct gcccaacttt cttgtacaaa gtggttggta
961agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc
1021ggtggcgcgt taagtcgaca atcaacctct ggatta

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