Construct: ORF ccsbBroadEn_11232
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016939.1_s300c1, BRDN0000391411
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF85 (7639)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7639 | ZNF85 | zinc finger protein 85 | XM_011528264.1 | 100% | 100% | |
| 2 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256173.1 | 97.2% | 96.4% | (many diffs) |
| 3 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_003429.5 | 89.3% | 86.2% | (many diffs) |
| 4 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256171.1 | 85% | 83% | (many diffs) |
| 5 | human | 7639 | ZNF85 | zinc finger protein 85 | XM_011528263.2 | 82.8% | 81% | (many diffs) |
| 6 | human | 7562 | ZNF708 | zinc finger protein 708 | NM_001297560.1 | 78.4% | 68.6% | (many diffs) |
| 7 | human | 7562 | ZNF708 | zinc finger protein 708 | NM_001297561.1 | 78.4% | 68.6% | (many diffs) |
| 8 | human | 440519 | ZNF724 | zinc finger protein 724 | NM_001355405.2 | 78.4% | 67.7% | (many diffs) |
| 9 | human | 440519 | ZNF724 | zinc finger protein 724 | XM_024451520.1 | 78.4% | 67.7% | (many diffs) |
| 10 | human | 7562 | ZNF708 | zinc finger protein 708 | XM_017027202.2 | 77.5% | 68.6% | (many diffs) |
| 11 | human | 7562 | ZNF708 | zinc finger protein 708 | XM_017027203.2 | 77.5% | 68.6% | (many diffs) |
| 12 | human | 170959 | ZNF431 | zinc finger protein 431 | NM_001319126.2 | 75.6% | 65.8% | (many diffs) |
| 13 | human | 170959 | ZNF431 | zinc finger protein 431 | NM_001319127.2 | 74.9% | 65.4% | (many diffs) |
| 14 | human | 440519 | ZNF724 | zinc finger protein 724 | NM_001355406.2 | 73.5% | 61.4% | (many diffs) |
| 15 | human | 440519 | ZNF724 | zinc finger protein 724 | NM_001355404.2 | 72.8% | 60.8% | (many diffs) |
| 16 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_001351671.2 | 70.3% | 59.3% | (many diffs) |
| 17 | human | 646864 | ZNF723 | zinc finger protein 723 | XM_024451653.1 | 68% | 58.5% | (many diffs) |
| 18 | human | 56242 | ZNF253 | zinc finger protein 253 | NM_001331134.1 | 67.5% | 55.7% | (many diffs) |
| 19 | human | 170959 | ZNF431 | zinc finger protein 431 | NM_133473.4 | 65.5% | 56.6% | (many diffs) |
| 20 | human | 170959 | ZNF431 | zinc finger protein 431 | NM_001319124.2 | 65.4% | 56.5% | (many diffs) |
| 21 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_001351670.2 | 64.5% | 53.7% | (many diffs) |
| 22 | human | 646864 | ZNF723 | zinc finger protein 723 | NM_001349726.2 | 63.8% | 56% | (many diffs) |
| 23 | human | 646864 | ZNF723 | zinc finger protein 723 | XM_024451652.1 | 63.8% | 56% | (many diffs) |
| 24 | human | 170959 | ZNF431 | zinc finger protein 431 | XM_011527750.2 | 63.8% | 55.1% | (many diffs) |
| 25 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256651.2 | 60.1% | 51.7% | (many diffs) |
| 26 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256654.2 | 60.1% | 51.7% | (many diffs) |
| 27 | human | 284443 | ZNF493 | zinc finger protein 493 | NM_175910.7 | 57.3% | 49.5% | (many diffs) |
| 28 | human | 51427 | ZNF107 | zinc finger protein 107 | NM_001013746.3 | 57% | 48.7% | (many diffs) |
| 29 | human | 51427 | ZNF107 | zinc finger protein 107 | NM_016220.5 | 57% | 48.7% | (many diffs) |
| 30 | human | 51427 | ZNF107 | zinc finger protein 107 | XM_017012283.2 | 57% | 48.7% | (many diffs) |
| 31 | human | 51427 | ZNF107 | zinc finger protein 107 | XM_017012285.2 | 57% | 48.7% | (many diffs) |
| 32 | human | 51427 | ZNF107 | zinc finger protein 107 | XM_017012286.1 | 57% | 48.7% | (many diffs) |
| 33 | human | 51427 | ZNF107 | zinc finger protein 107 | NM_001282360.1 | 56.1% | 46.9% | (many diffs) |
| 34 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256648.2 | 55.8% | 48% | (many diffs) |
| 35 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256649.2 | 55.8% | 48% | (many diffs) |
| 36 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256650.2 | 55.8% | 48% | (many diffs) |
| 37 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_011528257.3 | 55.8% | 48% | (many diffs) |
| 38 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_011528259.3 | 55.8% | 48% | (many diffs) |
| 39 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027207.2 | 55.8% | 48% | (many diffs) |
| 40 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027208.2 | 55.8% | 48% | (many diffs) |
| 41 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027209.2 | 55.8% | 48% | (many diffs) |
| 42 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027210.2 | 55.8% | 48% | (many diffs) |
| 43 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027211.2 | 55.8% | 48% | (many diffs) |
| 44 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027212.2 | 55.8% | 48% | (many diffs) |
| 45 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027213.2 | 55.8% | 48% | (many diffs) |
| 46 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027214.2 | 55.8% | 48% | (many diffs) |
| 47 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027215.2 | 55.8% | 48% | (many diffs) |
| 48 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027216.2 | 55.8% | 48% | (many diffs) |
| 49 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_003423.4 | 55.4% | 47.6% | (many diffs) |
| 50 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256653.1 | 54.8% | 47.1% | (many diffs) |
| 51 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_017012126.1 | 53.7% | 45.8% | (many diffs) |
| 52 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_017012127.1 | 53.7% | 45.8% | (many diffs) |
| 53 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_017012128.1 | 53.7% | 45.8% | (many diffs) |
| 54 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_024446743.1 | 53.7% | 45.8% | (many diffs) |
| 55 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_024446744.1 | 53.7% | 45.8% | (many diffs) |
| 56 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_024446745.1 | 53.7% | 45.8% | (many diffs) |
| 57 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_024446746.1 | 53.7% | 45.8% | (many diffs) |
| 58 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_024446747.1 | 53.7% | 45.8% | (many diffs) |
| 59 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_024446748.1 | 53.7% | 45.8% | (many diffs) |
| 60 | human | 51427 | ZNF107 | zinc finger protein 107 | NM_001282359.1 | 53.1% | 44.9% | (many diffs) |
| 61 | human | 163227 | ZNF100 | zinc finger protein 100 | NM_001351672.2 | 52.8% | 44.9% | (many diffs) |
| 62 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001367572.1 | 41.2% | 33.7% | (many diffs) |
| 63 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001271639.2 | 37.3% | 30.6% | (many diffs) |
| 64 | human | 105372319 | LOC105372319 | zinc finger protein 430-like | XM_017027571.1 | 29.6% | 21.1% | (many diffs) |
| 65 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001271649.2 | 27.7% | 22.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1677
- ORF length:
- 1608
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGCCTCAGC GCCCAGCCCT CTTCAAGTTT TTATAAACCA GTTTCAGAAG 121 TTATGTGTTC TCATTTTGCC CAAGACCTTT GGCCGGAGCA GAATATAAAA GATTCTTTCC 181 AAAAAGTGAC ACTGAAAAGA TATGGAAAAT GTAGACATGA AAATTTACCA TTAAGAAAAG 241 GCTGTGAAAG TATGGATGAG TGTAAGATGC ACAAAGGAGG TTGTAATGGA CTTAACCAAT 301 GTCTCACAGC TACCCAGAGC AAAATATTTC AATGTGATAA ATATGTAAAA GTCGCTCATA 361 AATTTTCAAA TTCAAACAGA CATGAGATAA GACATACTAA AAAGAAACCT TTCAAATGTA 421 CAAAATGTGG CAAATCATTT GGCATGATTT CATGCCTAAC TGAACATAGC AGAATTCATA 481 CTAGAGTAAA TTTCTACAAA TGTGAAGAAT GTGGAAAAGC CTTTAACTGG TCCTCAACCC 541 TTACTAAACA TAAGAGAATT CATACGGGAG AGAAACCTTA CAAATGTGAA GAATGTGGTA 601 AAGCCTTTAA CCAGTCCTCA AACCTTATTA AACATAAGAA AATTCATACT GGAGAGAAAC 661 CCTACAAATG TGAAGAATGT GGCAAAACTT TTAACCGATT CTCAACTCTT ACTACCCATA 721 AGATAATTCA TACTGGAGAG AAACCCTACA AATGTAAAGA ATGTGGTAAA GCTTTTAACC 781 GATCTTCAAC CCTTACTACC CATAGAAAAA TTCATACTGG AGAGAAACCT TACAAATGTG 841 AAGAATGTGG CAAAGCCTTT AAGCAGTCCT CAAACCTTAC TACACATAAG ATAATTCATA 901 CTGGAGAGAA ACCCTACAAA TGTAAAAAAT GTGGAAAAGC CTTTAACCAG TCTGCACACC 961 TTACCACACA TGAGGTAATT CATACTGGAG AGAAACCCTA CAAATGTGAA AAATGTGGAA 1021 AAGCCTTTAA TCATTTCTCA CACCTTACTA CACATAAGAT AATTCATACT GGAGAGAAAC 1081 CTTACAAATG TAAAGAATGT GGTAAAGCTT TTAAACACTC TTCAACCCTT ACTAAACATA 1141 AGATAATTCA TACTGGAGAG AAGCCTTACA AATGTAAAGA ATGTGAAAAA GCTTTTAACC 1201 AATCCTCAAA ACTTACTGAA CATAAGAAAA TTCATACTGG AGAGAAACCC TATGAATGTG 1261 AAAAATGTGG CAAAGCTTTT AACCAGTCCT CAAATCTTAC TAGACATAAG AAAAGTCATA 1321 CAGAAGAGAA ACCTTACAAA TGTGAAGAAT GTGGCAAAGG TTTTAAATGG CCCTCAACCC 1381 TTACTATCCA TAAGATAATT CATACTGGAG AGAAACCATA CAAATGTGAA GAATGTGGCA 1441 AAGCTTTTAA CCAATCCTCA AAACTTACCA AACATAAGAA AATTCATACT GGAGAGAAAC 1501 CCTACACATG TGAAGAATGT GGCAAAGCCT TTAACCAGTC CTCAAACCTT ACTAAACATA 1561 AGAGAATTCA TACTGGAGAA AAACCTTACA AATGTGAAGA ATGTGACAAA GCTTTTAAAT 1621 GGTCCTCAGT CCTTACTAAA CATAAGATAA TTCATACCGG AGAAAAATTA CAAATATTGC 1681 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1741 aac