Construct: ORF ccsbBroad304_13704

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006682.1_s304c1, BRDN0000402552
Derived from:
ccsbBroadEn_13704
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STAG3L2 (442582)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13704
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 378108 TRIM74 tripartite motif containing 74 XM_017012197.2 39.4% 31.7% (many diffs)
2 human 378108 TRIM74 tripartite motif containing 74 XR_002956445.1 23.4% (many diffs)
3 human 378108 TRIM74 tripartite motif containing 74 XR_001744733.2 21.6% (many diffs)
4 human 378108 TRIM74 tripartite motif containing 74 XR_001744745.2 21% (many diffs)
5 human 378108 TRIM74 tripartite motif containing 74 XR_001744740.2 20.9% (many diffs)
6 human 378108 TRIM74 tripartite motif containing 74 XR_002956442.1 18% (many diffs)
7 human 378108 TRIM74 tripartite motif containing 74 XR_001744744.2 16.9% (many diffs)
8 human 378108 TRIM74 tripartite motif containing 74 XR_002956448.1 14.9% (many diffs)
9 human 378108 TRIM74 tripartite motif containing 74 XR_001744741.2 13.1% (many diffs)
10 human 442582 STAG3L2 stromal antigen 3-like 2 (p... NR_040584.2 12.3% 1_422del;500_501insCTGGAGCT;655_1874del
11 human 378108 TRIM74 tripartite motif containing 74 XR_001744734.2 12% (many diffs)
12 human 54441 STAG3L1 stromal antigen 3-like 1 (p... NR_040583.2 11.1% (many diffs)
13 human 378108 TRIM74 tripartite motif containing 74 XR_001744751.2 10.9% 1_401del;528A>G;642_2176del
14 human 442578 STAG3L3 stromal antigen 3-like 3 (p... NR_040582.2 10.9% (many diffs)
15 human 378108 TRIM74 tripartite motif containing 74 XR_001744750.1 10.6% 1_401del;528A>G;642_2251del
16 human 378108 TRIM74 tripartite motif containing 74 XR_002956438.1 10.2% (many diffs)
17 human 378108 TRIM74 tripartite motif containing 74 XR_001744735.1 10.1% (many diffs)
18 human 378108 TRIM74 tripartite motif containing 74 XR_002956441.1 10.1% (many diffs)
19 human 378108 TRIM74 tripartite motif containing 74 XR_001744739.2 9.9% (many diffs)
20 human 378108 TRIM74 tripartite motif containing 74 XR_001744736.1 9.8% (many diffs)
21 human 378108 TRIM74 tripartite motif containing 74 XR_002956440.1 9.7% (many diffs)
22 human 378108 TRIM74 tripartite motif containing 74 XR_001744737.2 9.7% (many diffs)
23 human 378108 TRIM74 tripartite motif containing 74 XR_001744732.2 9% (many diffs)
24 human 378108 TRIM74 tripartite motif containing 74 XR_002956443.1 9% 1_430del;557A>G;671_2650del
25 human 378108 TRIM74 tripartite motif containing 74 XR_001744742.1 8.5% (many diffs)
26 human 378108 TRIM74 tripartite motif containing 74 XR_002956439.1 6.8% (many diffs)
27 human 378108 TRIM74 tripartite motif containing 74 XR_001744731.2 6.7% (many diffs)
28 human 10734 STAG3 stromal antigen 3 NM_001282718.2 6.3% 5.8% (many diffs)
29 human 10734 STAG3 stromal antigen 3 XM_017011687.1 6.2% 5.7% (many diffs)
30 human 10734 STAG3 stromal antigen 3 NM_001282716.1 6% 5.5% (many diffs)
31 human 10734 STAG3 stromal antigen 3 NM_012447.4 6% 5.5% (many diffs)
32 human 10734 STAG3 stromal antigen 3 NM_001282717.1 6% 5.5% (many diffs)
33 human 10734 STAG3 stromal antigen 3 XM_011515742.1 6% 5.5% (many diffs)
34 human 10734 STAG3 stromal antigen 3 XM_017011686.2 5.9% 5.4% (many diffs)
35 human 10734 STAG3 stromal antigen 3 XM_017011683.2 5.9% 5.4% (many diffs)
36 human 10734 STAG3 stromal antigen 3 XM_017011684.1 5.9% 5.4% (many diffs)
37 human 10734 STAG3 stromal antigen 3 XM_017011685.1 5.9% 5.4% (many diffs)
38 human 378108 TRIM74 tripartite motif containing 74 XR_002956444.1 5.8% 1_319del;446A>G;560_4069del
39 human 378108 TRIM74 tripartite motif containing 74 XR_002956449.1 5.8% (many diffs)
40 human 378108 TRIM74 tripartite motif containing 74 XR_002956447.1 5.7% (many diffs)
41 human 378108 TRIM74 tripartite motif containing 74 XR_002956450.1 5.7% (many diffs)
42 human 378108 TRIM74 tripartite motif containing 74 XR_001744749.2 5.7% 1_430del;557A>G;671_4180del
43 human 378108 TRIM74 tripartite motif containing 74 XR_002956446.1 5.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
306
ORF length:
240
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgca gcaccgagaa gtccgcgtga agtgcgtgaa ggctctgaaa gggctgtacg
121gtaaccggga cctgaccgca cgcctggagc tcttcactgg ccgcttcaag gactggatgg
181tttccatgat cgtggacaga gagtacagtg tggcagtgga ggccgtcaga ttactgatac
241ttatccttaa gaacatggaa ggggtgctga tggacgtgga ctgtgagagc gtctacccca
301ttgtgtaccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
361gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
421acctctggat ta

Download FASTA (ORF) (Full)