Construct: ORF ccsbBroad304_06849

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014211.1_s304c1, BRDN0000400033
Derived from:
ccsbBroadEn_06849
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RBMS2 (5939)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_06849
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5939 RBMS2 RNA binding motif single st... NM_002898.4 99.9% 100% 79T>C
2 human 5939 RBMS2 RNA binding motif single st... XM_006719544.4 99.9% 100% 79T>C
3 human 5939 RBMS2 RNA binding motif single st... XM_011538640.3 99.9% 100% 79T>C
4 human 5939 RBMS2 RNA binding motif single st... XM_011538639.2 97.4% 85% 79T>C;1056_1057insGGCAC;1217_1242del
5 human 5939 RBMS2 RNA binding motif single st... XM_017019775.2 94.6% 94.5% (many diffs)
6 human 5939 RBMS2 RNA binding motif single st... XM_005269061.3 94.6% 93.8% (many diffs)
7 human 5939 RBMS2 RNA binding motif single st... XM_024449117.1 92.6% 92.6% 0_1ins90
8 human 5939 RBMS2 RNA binding motif single st... XM_005269060.5 91.4% 84.9% (many diffs)
9 human 5939 RBMS2 RNA binding motif single st... XM_006719543.4 91.4% 85% (many diffs)
10 human 5939 RBMS2 RNA binding motif single st... XM_005269059.5 90% 81.6% 79T>C;1056_1057insGGCAC;1217_1344del
11 human 5939 RBMS2 RNA binding motif single st... XM_006719542.4 86.9% 75.4% (many diffs)
12 human 5939 RBMS2 RNA binding motif single st... XM_006719541.4 84.6% 75.2% 79T>C;1056_1057insGGCAC;1217_1431del
13 human 5939 RBMS2 RNA binding motif single st... XM_011538637.3 80.1% 70.6% (many diffs)
14 human 5939 RBMS2 RNA binding motif single st... XM_024449115.1 78.4% 69% 0_1ins90;966_967insGGCAC;1127_1341del
15 human 5939 RBMS2 RNA binding motif single st... XM_024449116.1 78.4% 69% 0_1ins90;966_967insGGCAC;1127_1341del
16 human 5939 RBMS2 RNA binding motif single st... XM_011538638.3 72.4% 60.2% (many diffs)
17 human 5939 RBMS2 RNA binding motif single st... XM_011538642.3 58.5% 49.2% 0_1ins375;681_682insGGCAC;842_1056del
18 human 5939 RBMS2 RNA binding motif single st... XM_017019778.2 57% 55.7% (many diffs)
19 human 5939 RBMS2 RNA binding motif single st... XM_005269066.4 49.4% 42% (many diffs)
20 human 5939 RBMS2 RNA binding motif single st... XM_017019777.2 46.8% 37.6% 0_1ins543;513_514insGGCAC;674_888del
21 human 5939 RBMS2 RNA binding motif single st... XR_002957368.1 13.6% (many diffs)
22 mouse 56516 Rbms2 RNA binding motif, single s... NM_019711.2 80.3% 83.2% (many diffs)
23 mouse 56516 Rbms2 RNA binding motif, single s... XM_006513899.2 80.3% 83.2% (many diffs)
24 mouse 56516 Rbms2 RNA binding motif, single s... XM_006513900.2 80.3% 83.2% (many diffs)
25 mouse 56516 Rbms2 RNA binding motif, single s... NM_001039080.1 74.2% 76.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1287
ORF length:
1221
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgct gctatccgtg acttccaggc ccgggatttc gacttttggc tacaatagaa
121acaacaagaa gccatatgtg tcactggctc agcagatggc accacctagc ccaagcaaca
181gtacacctaa cagcagtagt ggaagcaatg gaaatgacca gctgagcaaa accaacctat
241acatccgagg attgcaacca ggcactactg accaagatct tgtcaagctg tgtcagccat
301atggcaagat tgtttccact aaggccatac tggacaagac cacaaacaaa tgtaaaggct
361atggctttgt agattttgac agcccttcag cagcacagaa agctgtaaca gcactgaagg
421ccagcggtgt acaggcacag atggcaaagc aacaggaaca ggaccccaca aatttataca
481tctcaaacct cccactgtca atggatgagc aggaactgga ggggatgctg aagccctttg
541gccaggttat ctccacccgt atccttcgag ataccagtgg gaccagcaga ggtgttggct
601ttgcaaggat ggagtccaca gagaagtgtg aagccatcat cacccacttt aatggaaaat
661atattaagac accccctgga gtaccagccc catccgatcc cttgctttgc aaatttgctg
721atggcgggcc aaagaaacga cagaaccaag gaaaatttgt gcaaaatgga cgggcttggc
781caaggaatgc agacatgggc gtcatggcct tgacctatga ccccaccaca gctcttcaga
841atgggtttta cccagccccc tataacatca cccccaacag gatgcttgct cagtctgcac
901tctccccata cctttcctct cctgtgtctt cgtatcagag agtgactcag acatctcctc
961tacaagtacc taacccatcc tggatgcacc accattcata cctcatgcag ccttcaggtt
1021cagttctgac accagggatg gaccatccca tttctctcca gcctgcctcc atgatgggac
1081cccttaccca gcaactgggc catctctccc tcagcagcac aggcacgtat atgccgacgg
1141ctgcagctat gcaaggagct tacatctccc agtacacccc tgtgccttct tccagtgttt
1201cagtcgagga gagcagcggc caacagaacc aagtggcagt ggacgcaccc tcagagcatg
1261gggtctattc tttccagttc aacaagtacc caactttctt gtacaaagtg gttggtaagc
1321ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
1381ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)

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