Construct: ORF ccsbBroad304_11058

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017578.1_s304c1, BRDN0000405449
Derived from:
ccsbBroadEn_11058
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAPK10 (5602)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11058
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5602 MAPK10 mitogen-activated protein k... NM_001318068.1 100% 100%
2 human 5602 MAPK10 mitogen-activated protein k... XM_017008449.2 100% 100%
3 human 5602 MAPK10 mitogen-activated protein k... XM_017008450.2 100% 100%
4 human 5602 MAPK10 mitogen-activated protein k... XM_024454148.1 100% 100%
5 human 5602 MAPK10 mitogen-activated protein k... XM_017008447.2 96.8% 97.4% (many diffs)
6 human 5602 MAPK10 mitogen-activated protein k... XM_017008448.2 96.8% 97.4% (many diffs)
7 human 5602 MAPK10 mitogen-activated protein k... XM_017008445.2 88.3% 88.8% (many diffs)
8 human 5602 MAPK10 mitogen-activated protein k... XM_017008452.2 82.8% 82.7% (many diffs)
9 human 5602 MAPK10 mitogen-activated protein k... XM_017008451.2 75.6% 75.4% (many diffs)
10 human 5602 MAPK10 mitogen-activated protein k... XM_017008427.2 74.8% 74.8% 1_321del
11 human 5602 MAPK10 mitogen-activated protein k... XM_017008428.2 74.8% 74.8% 1_321del
12 human 5602 MAPK10 mitogen-activated protein k... NM_001351624.2 72.6% 73% (many diffs)
13 human 5602 MAPK10 mitogen-activated protein k... NM_138980.4 72.6% 73% (many diffs)
14 human 5602 MAPK10 mitogen-activated protein k... XM_006714268.3 72.6% 73% (many diffs)
15 human 5602 MAPK10 mitogen-activated protein k... XM_011532120.3 72.6% 73% (many diffs)
16 human 5602 MAPK10 mitogen-activated protein k... XM_011532121.3 72.6% 73% (many diffs)
17 human 5602 MAPK10 mitogen-activated protein k... XM_017008423.2 72.6% 73% (many diffs)
18 human 5602 MAPK10 mitogen-activated protein k... XM_017008433.2 69.2% 69% 1_321del;616_617ins72
19 human 5602 MAPK10 mitogen-activated protein k... NM_001318067.1 68.7% 68.7% 1_435del
20 human 5602 MAPK10 mitogen-activated protein k... XM_005263131.3 68.7% 68.7% 1_435del
21 human 5602 MAPK10 mitogen-activated protein k... NM_138982.4 66.7% 67% (many diffs)
22 human 5602 MAPK10 mitogen-activated protein k... XM_005263129.3 66.7% 67% (many diffs)
23 human 5602 MAPK10 mitogen-activated protein k... XM_005263130.3 66.7% 67% (many diffs)
24 human 5602 MAPK10 mitogen-activated protein k... XM_011532117.3 66.7% 67% (many diffs)
25 human 5602 MAPK10 mitogen-activated protein k... XM_011532118.3 66.7% 67% (many diffs)
26 human 5602 MAPK10 mitogen-activated protein k... XM_017008420.2 66.7% 67% (many diffs)
27 human 5602 MAPK10 mitogen-activated protein k... XM_024454139.1 66.7% 67% (many diffs)
28 human 5602 MAPK10 mitogen-activated protein k... XM_024454140.1 66.7% 67% (many diffs)
29 human 5602 MAPK10 mitogen-activated protein k... XM_024454141.1 66.7% 67% (many diffs)
30 human 5602 MAPK10 mitogen-activated protein k... XM_024454142.1 66.7% 67% (many diffs)
31 human 5602 MAPK10 mitogen-activated protein k... XM_024454143.1 66.7% 67% (many diffs)
32 human 5602 MAPK10 mitogen-activated protein k... NM_001318069.2 64.8% 67% (many diffs)
33 human 5602 MAPK10 mitogen-activated protein k... NM_001363657.2 64.3% 63.8% 1_321del;1136_1140delCAGCA;1152_1153ins131
34 human 5602 MAPK10 mitogen-activated protein k... XM_017008422.2 63.5% 63.3% 1_435del;730_731ins72
35 human 5602 MAPK10 mitogen-activated protein k... NM_001351625.2 62.2% 61.9% (many diffs)
36 human 5602 MAPK10 mitogen-activated protein k... XM_017008434.2 62.2% 61.9% (many diffs)
37 human 5602 MAPK10 mitogen-activated protein k... XM_017008435.2 62.2% 61.9% (many diffs)
38 human 5602 MAPK10 mitogen-activated protein k... XM_017008436.2 62.2% 61.9% (many diffs)
39 human 5602 MAPK10 mitogen-activated protein k... XM_017008437.2 62.2% 61.9% (many diffs)
40 human 5602 MAPK10 mitogen-activated protein k... XM_006714269.3 59.1% 58.6% 1_435del;1250_1254delCAGCA;1266_1267ins131
41 human 5602 MAPK10 mitogen-activated protein k... XM_017008441.2 58.7% 57.9% (many diffs)
42 human 5599 MAPK8 mitogen-activated protein k... NM_001323322.2 58.2% 67.9% (many diffs)
43 human 5599 MAPK8 mitogen-activated protein k... NM_001323323.2 58.2% 67.9% (many diffs)
44 human 5599 MAPK8 mitogen-activated protein k... NM_001323330.2 58.2% 67.9% (many diffs)
45 human 5599 MAPK8 mitogen-activated protein k... XM_024448079.1 58.2% 67.9% (many diffs)
46 human 5602 MAPK10 mitogen-activated protein k... NM_002753.5 57.1% 56.8% (many diffs)
47 human 5602 MAPK10 mitogen-activated protein k... XM_005263135.4 57.1% 56.8% (many diffs)
48 human 5602 MAPK10 mitogen-activated protein k... XM_017008429.2 57.1% 56.8% (many diffs)
49 human 5602 MAPK10 mitogen-activated protein k... XM_017008430.2 57.1% 56.8% (many diffs)
50 human 5602 MAPK10 mitogen-activated protein k... XM_017008432.2 57.1% 56.8% (many diffs)
51 human 5602 MAPK10 mitogen-activated protein k... XM_024454144.1 57.1% 56.8% (many diffs)
52 human 5602 MAPK10 mitogen-activated protein k... XM_024454145.1 57.1% 56.8% (many diffs)
53 human 5602 MAPK10 mitogen-activated protein k... XM_024454146.1 57.1% 56.8% (many diffs)
54 human 5602 MAPK10 mitogen-activated protein k... XM_024454147.1 57.1% 56.8% (many diffs)
55 human 5599 MAPK8 mitogen-activated protein k... NM_001323321.2 51.4% 59.1% (many diffs)
56 human 5599 MAPK8 mitogen-activated protein k... NM_001323325.2 51.4% 59.1% (many diffs)
57 human 5599 MAPK8 mitogen-activated protein k... NM_139046.4 51.4% 59.1% (many diffs)
58 human 5599 MAPK8 mitogen-activated protein k... XM_024448080.1 51.4% 59.1% (many diffs)
59 human 5602 MAPK10 mitogen-activated protein k... XM_017008453.2 22.4% 21.3% (many diffs)
60 human 5602 MAPK10 mitogen-activated protein k... XM_017008454.2 21.3% 21.1% 1_435del;731_732delGAinsTT;735_735delGins658
61 human 5602 MAPK10 mitogen-activated protein k... XM_024454149.1 21.3% 21.1% 1_435del;731_732delGAinsTT;735_735delGins658
62 mouse 26414 Mapk10 mitogen-activated protein k... XM_030254518.1 74.1% 81% (many diffs)
63 mouse 26414 Mapk10 mitogen-activated protein k... XM_011249450.3 72.3% 79.7% (many diffs)
64 mouse 26414 Mapk10 mitogen-activated protein k... XM_017320889.2 67.8% 74.1% (many diffs)
65 mouse 26414 Mapk10 mitogen-activated protein k... NM_001310683.1 66.2% 73% (many diffs)
66 mouse 26414 Mapk10 mitogen-activated protein k... XM_017320888.2 66.2% 73% (many diffs)
67 mouse 26414 Mapk10 mitogen-activated protein k... NM_001310685.1 62.2% 68.1% (many diffs)
68 mouse 26414 Mapk10 mitogen-activated protein k... XM_017320886.2 62.2% 68.1% (many diffs)
69 mouse 26414 Mapk10 mitogen-activated protein k... NM_001081567.2 60.8% 67% (many diffs)
70 mouse 26414 Mapk10 mitogen-activated protein k... XM_030254516.1 60.8% 67% (many diffs)
71 mouse 26414 Mapk10 mitogen-activated protein k... NM_001318102.1 59% 67% (many diffs)
72 mouse 26414 Mapk10 mitogen-activated protein k... XM_030254519.1 57.8% 63.1% (many diffs)
73 mouse 26414 Mapk10 mitogen-activated protein k... NM_001310686.2 56.2% 61.9% (many diffs)
74 mouse 26414 Mapk10 mitogen-activated protein k... XM_017320890.2 56.2% 61.9% (many diffs)
75 mouse 26414 Mapk10 mitogen-activated protein k... XM_017320891.2 56.2% 61.9% (many diffs)
76 mouse 26414 Mapk10 mitogen-activated protein k... NM_001318131.1 53.1% 57.9% (many diffs)
77 mouse 26414 Mapk10 mitogen-activated protein k... XM_006534950.4 53.1% 57.9% (many diffs)
78 mouse 26414 Mapk10 mitogen-activated protein k... NM_009158.3 51.7% 56.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1026
ORF length:
957
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggaactgatg gatgccaact tatgtcaagt gattcagatg gaattagacc
121atgagcgaat gtcttacctg ctgtaccaaa tgttgtgtgg cattaagcac ctccattctg
181ctggaattat tcacagggat ttaaaaccaa gtaacattgt agtcaagtct gattgcacat
241tgaaaatcct ggactttgga ctggccagga cagcaggcac aagcttcatg atgactccat
301atgtggtgac acgttattac agagcccctg aggtcatcct ggggatgggc tacaaggaga
361acgttgacat gtggtcagta gggtgcatca tgggagaaat gataaaaggt gcagtgctgt
421ttcctggcac tgatcatatt gaccagtgga ataaggtaat tgaacaacta ggaacaccat
481gtccagaatt catgaagaaa ttgcaaccca cagtaagaaa ctatgtggag aatcggccca
541agtatgcggg actcaccttc cccaaactct tcccagattc cctcttccca gcggactccg
601agcacaataa actcaaagcc agccaagcca gggacttgtt gtcaaagatg ctagtgattg
661acccagcaaa aagaatatca gtggacgacg ccttacagca tccctacatc aacgtctggt
721atgacccagc cgaagtggag gcgcctccac ctcagatata tgacaagcag ttggatgaaa
781gagaacacac aattgaagaa tggaaagaac ttatctacaa ggaagtaatg aattcagaag
841aaaagactaa aaatggtgta gtaaaaggac agccttctcc ttcaggtgca gcagtgaaca
901gcagtgagag tctccctcca tcctcgtctg tcaatgacat ctcctccatg tccaccgacc
961agaccctggc atctgacact gacagcagcc tggaagcctc ggcaggaccc ctgggttgtt
1021gcaggttgcc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
1081gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
1141acctctggat ta

Download FASTA (ORF) (Full)