Construct: ORF ccsbBroad304_11720

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003261.1_s304c1, BRDN0000399544
Derived from:
ccsbBroadEn_11720
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLASP1 (23332)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11720
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23332 CLASP1 cytoplasmic linker associat... XM_017003689.2 12.3% 12.3% 1_3177del
2 human 23332 CLASP1 cytoplasmic linker associat... XM_017003688.2 12.1% 12.1% 1_3246del
3 human 23332 CLASP1 cytoplasmic linker associat... XM_017003687.2 12% 12% 1_3261del
4 human 23332 CLASP1 cytoplasmic linker associat... XM_017003686.2 12% 12% 1_3267del
5 human 23332 CLASP1 cytoplasmic linker associat... XM_017003685.2 12% 12% 1_3270del
6 human 23332 CLASP1 cytoplasmic linker associat... XM_017003684.2 11.9% 11.9% 1_3285del
7 human 23332 CLASP1 cytoplasmic linker associat... XM_017003683.2 11.9% 11.9% 1_3288del
8 human 23332 CLASP1 cytoplasmic linker associat... XM_017003682.2 11.9% 11.9% 1_3291del
9 human 23332 CLASP1 cytoplasmic linker associat... XM_017003681.2 11.9% 11.9% 1_3294del
10 human 23332 CLASP1 cytoplasmic linker associat... XM_006712385.1 11.8% 11.8% 1_3318del
11 human 23332 CLASP1 cytoplasmic linker associat... XM_017003679.2 11.6% 11.6% 1_3375del
12 human 23332 CLASP1 cytoplasmic linker associat... XM_017003678.2 11.6% 11.6% 1_3378del
13 human 23332 CLASP1 cytoplasmic linker associat... XM_017003677.2 11.6% 11.6% 1_3402del
14 human 23332 CLASP1 cytoplasmic linker associat... XM_017003676.2 11.4% 11.4% 1_3450del
15 human 23332 CLASP1 cytoplasmic linker associat... XM_017003680.2 10.9% 9.9% (many diffs)
16 human 23332 CLASP1 cytoplasmic linker associat... XM_006712383.1 10.2% 10.2% 1_3915del
17 human 23332 CLASP1 cytoplasmic linker associat... XM_006712382.1 10.1% 10.1% 1_3939del
18 human 23332 CLASP1 cytoplasmic linker associat... XM_017003675.1 10.1% 10.1% 1_3942del
19 human 23332 CLASP1 cytoplasmic linker associat... XM_006712381.1 10.1% 10.1% 1_3963del
20 human 23332 CLASP1 cytoplasmic linker associat... NM_001142274.2 10.1% 10.1% 1_3966del
21 human 23332 CLASP1 cytoplasmic linker associat... XM_017003674.1 10.1% 10.1% 1_3966del
22 human 23332 CLASP1 cytoplasmic linker associat... NM_001207051.2 10% 10% 1_3984del
23 human 23332 CLASP1 cytoplasmic linker associat... XM_017003672.1 10% 10% 1_3987del
24 human 23332 CLASP1 cytoplasmic linker associat... XM_017003673.1 10% 10% 1_3987del
25 human 23332 CLASP1 cytoplasmic linker associat... NM_001142273.2 10% 10% 1_3990del
26 human 23332 CLASP1 cytoplasmic linker associat... XM_011510849.1 10% 10% 1_4011del
27 human 23332 CLASP1 cytoplasmic linker associat... XM_006712377.1 10% 10% 1_4014del
28 human 23332 CLASP1 cytoplasmic linker associat... XM_011510848.1 9.9% 9.9% 1_4035del
29 human 23332 CLASP1 cytoplasmic linker associat... XM_017003670.1 9.9% 9.9% 1_4047del
30 human 23332 CLASP1 cytoplasmic linker associat... XM_017003669.1 9.8% 9.8% 1_4074del
31 human 23332 CLASP1 cytoplasmic linker associat... XM_017003667.1 9.8% 9.8% 1_4098del
32 human 23332 CLASP1 cytoplasmic linker associat... XM_017003665.1 9.7% 9.7% 1_4146del
33 human 23332 CLASP1 cytoplasmic linker associat... NM_015282.3 9.6% 9.6% 1_4167del
34 human 23332 CLASP1 cytoplasmic linker associat... XM_017003657.1 9.3% 9.3% 1_4317del
35 human 23332 CLASP1 cytoplasmic linker associat... XM_017003671.1 9.2% 8.4% (many diffs)
36 human 23332 CLASP1 cytoplasmic linker associat... XM_017003668.1 9.1% 8.3% (many diffs)
37 human 23332 CLASP1 cytoplasmic linker associat... XM_017003666.1 9% 8.2% (many diffs)
38 human 23332 CLASP1 cytoplasmic linker associat... XM_017003664.1 8.9% 8.2% (many diffs)
39 human 23332 CLASP1 cytoplasmic linker associat... XM_017003663.1 8.9% 8.2% (many diffs)
40 human 23332 CLASP1 cytoplasmic linker associat... XM_017003662.1 8.9% 8.1% (many diffs)
41 human 23332 CLASP1 cytoplasmic linker associat... XM_017003661.1 8.9% 8.1% (many diffs)
42 human 23332 CLASP1 cytoplasmic linker associat... XM_017003660.1 8.8% 8.1% (many diffs)
43 human 23332 CLASP1 cytoplasmic linker associat... XM_017003659.1 8.8% 8.1% (many diffs)
44 human 23332 CLASP1 cytoplasmic linker associat... XM_017003658.1 8.8% 8% (many diffs)
45 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312819.1 11.7% 12.9% (many diffs)
46 mouse 76707 Clasp1 CLIP associating protein 1 NM_001293301.1 9.2% 10.1% (many diffs)
47 mouse 76707 Clasp1 CLIP associating protein 1 NM_029709.2 9.1% 10.1% (many diffs)
48 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312817.1 9.1% 10.1% (many diffs)
49 mouse 76707 Clasp1 CLIP associating protein 1 XM_011248108.1 9.1% 10% (many diffs)
50 mouse 76707 Clasp1 CLIP associating protein 1 XM_006529943.1 9.1% 10% (many diffs)
51 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312814.1 9.1% 10% (many diffs)
52 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312807.1 9% 10% (many diffs)
53 mouse 76707 Clasp1 CLIP associating protein 1 XM_006529942.1 9% 10% (many diffs)
54 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312799.1 9% 10% (many diffs)
55 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312796.1 9% 9.9% (many diffs)
56 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312793.1 8.9% 9.9% (many diffs)
57 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312787.1 8.9% 9.9% (many diffs)
58 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312784.1 8.9% 9.8% (many diffs)
59 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312783.1 8.9% 9.8% (many diffs)
60 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312777.1 8.9% 9.8% (many diffs)
61 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312773.1 8.9% 9.8% (many diffs)
62 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312771.1 8.9% 9.8% (many diffs)
63 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312769.1 8.9% 9.8% (many diffs)
64 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312770.1 8.9% 9.8% (many diffs)
65 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312767.1 8.8% 9.8% (many diffs)
66 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312764.1 8.8% 9.8% (many diffs)
67 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312756.1 8.8% 9.7% (many diffs)
68 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312757.1 8.8% 9.7% (many diffs)
69 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312762.1 8.8% 9.7% (many diffs)
70 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312754.1 8.8% 9.7% (many diffs)
71 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312751.1 8.8% 9.7% (many diffs)
72 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312749.1 8.7% 9.7% (many diffs)
73 mouse 76707 Clasp1 CLIP associating protein 1 XM_006529949.1 8.7% 9.7% (many diffs)
74 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312747.1 8.7% 9.6% (many diffs)
75 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312750.1 8.7% 9.6% (many diffs)
76 mouse 76707 Clasp1 CLIP associating protein 1 XM_006529948.1 8.7% 9.6% (many diffs)
77 mouse 76707 Clasp1 CLIP associating protein 1 XM_006529939.1 8.7% 9.6% (many diffs)
78 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312744.1 8.7% 9.6% (many diffs)
79 mouse 76707 Clasp1 CLIP associating protein 1 XM_011248107.1 8.7% 9.6% (many diffs)
80 mouse 76707 Clasp1 CLIP associating protein 1 XM_006529938.1 8.6% 9.6% (many diffs)
81 mouse 76707 Clasp1 CLIP associating protein 1 XM_006529937.1 8.6% 9.5% (many diffs)
82 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312738.1 8.6% 9.5% (many diffs)
83 mouse 76707 Clasp1 CLIP associating protein 1 NM_001293300.1 8.6% 9.5% (many diffs)
84 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312737.1 8.5% 9.4% (many diffs)
85 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312734.1 8.5% 9.4% (many diffs)
86 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312736.1 8.5% 9.4% (many diffs)
87 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312733.1 8.5% 9.4% (many diffs)
88 mouse 76707 Clasp1 CLIP associating protein 1 XM_006529929.1 8.4% 9.3% (many diffs)
89 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312727.1 8.4% 9.2% (many diffs)
90 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312725.1 8.3% 9.2% (many diffs)
91 mouse 76707 Clasp1 CLIP associating protein 1 XM_006529924.1 8.3% 9.2% (many diffs)
92 mouse 76707 Clasp1 CLIP associating protein 1 XM_017312724.1 8.3% 9.2% (many diffs)
93 mouse 76707 Clasp1 CLIP associating protein 1 XM_006529922.1 8.3% 9.1% (many diffs)
94 mouse 76707 Clasp1 CLIP associating protein 1 XM_006529920.1 8.2% 9.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
513
ORF length:
447
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa gactctggaa gcccacaaag actcccataa ggaggtggtg agagcggctg
121aggaggctgc gtccacactg gccagttcca tccacccgga gcagtgcatc aaggtgctct
181gccccatcat ccagacggcc gactacccca tcaaccttgc tgccatcaag atgcagacca
241aagtcgtcga gaggatcgca aaggagtcat tgctgcagct ccttgtcgac atcatcccag
301gcttgctgca gggttatgac aacaccgaaa gtagtgtgcg taaggccagc gtgttttgct
361tagtggcaat ttattccgta atcggagaag acctgaaacc tcaccttgca cagctcacag
421ggagcaagat gaagctacta aacttataca taaagagggc ccagaccacc aacagcaaca
481gcagctcctc ctccgatgtc tccacgcaca gctacccaac tttcttgtac aaagtggttg
541gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
601accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)

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