Construct: ORF ccsbBroadEn_03803

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008885.1_s300c1, BRDN0000389568
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ACTR3B (57180)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57180 ACTR3B actin related protein 3B NM_020445.6 100% 100%
2 human 57180 ACTR3B actin related protein 3B NM_001350944.1 89.9% 89.9% 948_949ins126
3 human 57180 ACTR3B actin related protein 3B XM_017012460.1 83.8% 74.9% (many diffs)
4 human 57180 ACTR3B actin related protein 3B XM_006716065.2 83.3% 78.7% (many diffs)
5 human 57180 ACTR3B actin related protein 3B NM_001040135.2 83.2% 83.2% 951_952ins210
6 human 57180 ACTR3B actin related protein 3B XM_006716066.1 81.1% 73.9% (many diffs)
7 human 57180 ACTR3B actin related protein 3B XM_011516425.2 79.7% 75.2% (many diffs)
8 human 57180 ACTR3B actin related protein 3B NM_001350940.1 78.9% 78.9% 0_1ins264
9 human 57180 ACTR3B actin related protein 3B NM_001350941.1 78.9% 78.9% 0_1ins264
10 human 57180 ACTR3B actin related protein 3B NM_001350942.1 78.9% 78.9% 0_1ins264
11 human 57180 ACTR3B actin related protein 3B NM_001350943.1 78.9% 78.9% 0_1ins264
12 human 57180 ACTR3B actin related protein 3B XM_006716067.4 77.1% 76.3% (many diffs)
13 human 57180 ACTR3B actin related protein 3B XM_011516426.2 77% 76.5% (many diffs)
14 human 10096 ACTR3 actin related protein 3 NM_005721.5 76.8% 90.6% (many diffs)
15 human 57180 ACTR3B actin related protein 3B XM_011516427.1 76% 75.8% 953T>A;955_956delCGinsGT;957_958ins297
16 human 57180 ACTR3B actin related protein 3B XM_017012461.1 75.8% 75.8% 951_952ins303
17 human 57180 ACTR3B actin related protein 3B NM_001350945.1 69.1% 69.1% 0_1ins387
18 human 57180 ACTR3B actin related protein 3B XM_017012463.1 69.1% 69.1% 0_1ins387
19 human 57180 ACTR3B actin related protein 3B NM_001350946.1 62.2% 62.2% 0_1ins264;687_688ins210
20 human 57180 ACTR3B actin related protein 3B NR_146951.1 56.3% 1_134del;673_674insGGCA;1385_2213del
21 human 57180 ACTR3B actin related protein 3B NR_146949.1 53.8% (many diffs)
22 human 653857 ACTR3C actin related protein 3C XM_017012548.1 52.6% 49.6% (many diffs)
23 human 57180 ACTR3B actin related protein 3B XM_017012465.1 52.3% 52.3% 0_1ins387;564_565ins210
24 human 57180 ACTR3B actin related protein 3B NR_146947.1 52.2% 1_134del;721_722ins95;1294_2122del
25 human 653857 ACTR3C actin related protein 3C XM_011516502.2 51.3% 47% (many diffs)
26 human 653857 ACTR3C actin related protein 3C XM_024446879.1 51.3% 47% (many diffs)
27 human 57180 ACTR3B actin related protein 3B NR_146950.1 50.7% (many diffs)
28 human 57180 ACTR3B actin related protein 3B NR_146948.1 49.7% (many diffs)
29 human 57180 ACTR3B actin related protein 3B NR_146946.1 48.9% (many diffs)
30 human 653857 ACTR3C actin related protein 3C XM_005250043.4 46.6% 44.8% (many diffs)
31 human 653857 ACTR3C actin related protein 3C NM_001164458.1 46.5% 44.7% (many diffs)
32 human 653857 ACTR3C actin related protein 3C NM_001164459.1 46.5% 44.7% (many diffs)
33 human 653857 ACTR3C actin related protein 3C XM_011516506.3 46.5% 44.7% (many diffs)
34 human 653857 ACTR3C actin related protein 3C XM_011516507.2 46.5% 44.7% (many diffs)
35 human 653857 ACTR3C actin related protein 3C XM_011516508.2 46.5% 44.7% (many diffs)
36 human 653857 ACTR3C actin related protein 3C XM_017012549.1 46.5% 44.7% (many diffs)
37 human 653857 ACTR3C actin related protein 3C XM_024446880.1 46.5% 44.7% (many diffs)
38 human 653857 ACTR3C actin related protein 3C XM_011516511.3 45.6% 44.9% (many diffs)
39 human 653857 ACTR3C actin related protein 3C NM_001351027.1 27.8% 25.7% (many diffs)
40 human 653857 ACTR3C actin related protein 3C XM_024446884.1 27.8% 25.7% (many diffs)
41 human 653857 ACTR3C actin related protein 3C NM_001351028.2 26.7% 25.5% (many diffs)
42 human 653857 ACTR3C actin related protein 3C XM_017012550.2 26.7% 25.5% (many diffs)
43 human 653857 ACTR3C actin related protein 3C XM_024446881.1 26.7% 25.5% (many diffs)
44 human 653857 ACTR3C actin related protein 3C NM_001351029.1 14.4% 11.4% (many diffs)
45 human 653857 ACTR3C actin related protein 3C NM_001351030.1 14.4% 11.4% (many diffs)
46 human 653857 ACTR3C actin related protein 3C XM_024446882.1 14.4% 11.4% (many diffs)
47 human 653857 ACTR3C actin related protein 3C XM_024446883.1 14.4% 11.4% (many diffs)
48 mouse 242894 Actr3b ARP3 actin-related protein 3B NM_001004365.2 89.8% 98.5% (many diffs)
49 mouse 242894 Actr3b ARP3 actin-related protein 3B XM_006535713.3 78.6% 87% (many diffs)
50 mouse 242894 Actr3b ARP3 actin-related protein 3B NM_001310504.1 71% 77.7% (many diffs)
51 mouse 242894 Actr3b ARP3 actin-related protein 3B XM_011249768.2 62% 67.9% (many diffs)
52 mouse 242894 Actr3b ARP3 actin-related protein 3B XM_017320880.1 62% 67.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1320
ORF length:
1254
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC AGGCTCCCTG CCTCCCTGCG TGGTGGACTG TGGCACCGGG TATACCAAGC
121TTGGCTACGC AGGCAACACT GAGCCCCAGT TCATTATTCC TTCATGTATT GCCATCAGAG
181AGTCAGCAAA GGTAGTTGAC CAAGCTCAAA GGAGAGTGTT GAGGGGAGTT GATGACCTTG
241ACTTTTTCAT AGGAGATGAA GCCATCGATA AACCTACATA TGCTACAAAG TGGCCGATAC
301GACATGGAAT CATTGAAGAC TGGGATCTTA TGGAAAGGTT CATGGAGCAA GTGGTTTTTA
361AATATCTTCG AGCTGAACCT GAGGACCATT ATTTTTTAAT GACAGAACCT CCACTCAATA
421CACCAGAAAA CAGAGAGTAT CTTGCAGAAA TTATGTTTGA ATCATTTAAC GTACCAGGAC
481TCTACATTGC AGTTCAGGCA GTGCTGGCCT TGGCGGCATC TTGGACATCT CGACAAGTGG
541GTGAACGTAC GTTAACGGGG ATAGTCATTG ACAGCGGAGA TGGAGTCACC CATGTTATCC
601CAGTGGCAGA AGGTTATGTA ATTGGAAGCT GCATCAAACA CATCCCGATT GCAGGTAGAG
661ATATTACGTA TTTCATTCAA CAGCTGCTAA GGGAGAGGGA GGTGGGAATC CCTCCTGAGC
721AGTCACTGGA GACCGCAAAA GCCATTAAGG AGAAATACTG TTACATTTGC CCCGATATAG
781TCAAGGAATT TGCCAAGTAT GATGTGGATC CCCGGAAGTG GATCAAACAG TACACGGGTA
841TCAATGCGAT CAACCAGAAG AAGTTTGTTA TAGACGTTGG TTACGAAAGA TTCCTGGGAC
901CTGAAATATT CTTTCACCCG GAGTTTGCCA ACCCAGACTT TATGGAGTCC ATCTCAGATG
961TTGTTGATGA AGTAATACAG AACTGCCCCA TCGATGTGCG GCGCCCGCTG TATAAGAATG
1021TCGTACTCTC AGGAGGCTCC ACCATGTTCA GGGATTTCGG ACGCCGACTG CAGAGGGATT
1081TGAAGAGAGT GGTGGATGCT AGGCTGAGGC TCAGCGAGGA GCTCAGCGGC GGGAGGATCA
1141AGCCGAAGCC TGTGGAGGTC CAGGTGGTCA CGCATCACAT GCAGCGCTAC GCCGTGTGGT
1201TCGGAGGCTC CATGCTGGCC TCGACTCCCG AGTTCTTTCA GGTCTGCCAC ACCAAGAAGG
1261ACTATGAAGA GTACGGGCCC AGCATCTGCC GCCACAACCC CGTCTTTGGA GTCATGTCCT
1321ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
1381acgaac

Download FASTA (ORF) (Full)

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