Construct: ORF ccsbBroadEn_15687

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014146.1_s300c1, BRDN0000395230
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC12A6 (9990)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9990 SLC12A6 solute carrier family 12 me... NM_001042494.2 84.5% 84.3% (many diffs)
2 human 9990 SLC12A6 solute carrier family 12 me... NM_001042495.2 84.5% 84.3% (many diffs)
3 human 9990 SLC12A6 solute carrier family 12 me... NM_005135.2 82% 81.4% (many diffs)
4 human 9990 SLC12A6 solute carrier family 12 me... NM_001042496.2 80.9% 80.6% (many diffs)
5 human 9990 SLC12A6 solute carrier family 12 me... NM_001365088.1 80.2% 80% (many diffs)
6 human 9990 SLC12A6 solute carrier family 12 me... NM_133647.1 80.2% 80% (many diffs)
7 human 9990 SLC12A6 solute carrier family 12 me... NM_001042497.2 79% 78.7% (many diffs)
8 human 9990 SLC12A6 solute carrier family 12 me... XM_006720793.4 76% 75.8% (many diffs)
9 human 9990 SLC12A6 solute carrier family 12 me... XM_011522269.3 61.9% 61.8% 1_177del;1591_1592insTAG;2040_2041ins963
10 human 9990 SLC12A6 solute carrier family 12 me... XR_931960.3 51.8% (many diffs)
11 mouse 107723 Slc12a6 solute carrier family 12, m... NM_133648.2 74.3% 80% (many diffs)
12 mouse 107723 Slc12a6 solute carrier family 12, m... XM_006498546.3 74.1% 79.2% (many diffs)
13 mouse 107723 Slc12a6 solute carrier family 12, m... NM_133649.2 72.6% 78.4% (many diffs)
14 mouse 107723 Slc12a6 solute carrier family 12, m... XM_006498545.3 71.4% 77.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2898
ORF length:
2829
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcaccat gagtgagatg tctggggcca ccacttcgct ggcaactgtt gcactggatc
121cacccagtga ccggacttct cacccccagg atgtcatcga ggacctgagt cagaactcca
181tcacagggga acacagccaa ctgttagacg acggacataa gaaagctcga aatgcttatc
241tcaataattc caattatgaa gaaggagatg aatattttga taaaaatttg gcactctttg
301aggaagaaat ggacaccaga ccgaaggtgt cttccctcct caaccgcatg gccaattaca
361ctaatctgac tcaaggagca aaggaacatg aagaggcaga aaacatcact gaagggaaaa
421agaagcccac caagaccccc caaatgggta ccttcatggg tgtctacctc ccatgtctac
481aaaatatttt tggagtgatc ctttttttac gccttacatg ggtggtgggc acagctggag
541ttcttcaggc ttttgcaatt gtccttatct gctgctgctg tacaatgttg actgctatct
601ccatgagtgc cattgccact aatggagtgg tgccagctgg gggctcatac tttatgattt
661cccgggcact gggcccagag tttggtgggg ctgttggcct ctgcttttat cttggtacca
721catttgcagc agccatgtac atccttggtg ccattgaaat ctttctggtc tatatcgtcc
781cccgagctgc catctttcac agtgatgacg cactcaagga atcagcagcc atgctaaata
841acatgcgtgt ctacggcaca gctttcttgg tccttatggt attagtggta tttatcggcg
901tacgctatgt gaacaagttt gcctcacttt tcctggcctg tgtcattgtg tccatcttgg
961ccatctatgc tggagccatc aagtcttctt ttgctcctcc acacttcccg gtctgcatgc
1021tgggtaaccg caccctttca tcaagacaca ttgacgtttg ctctaagacc aaggaaatta
1081acaacatgac agtcccatca aagttatggg gattcttctg taactcgagt caatttttca
1141atgccacctg tgatgaatac tttgttcaca ataacgtcac ttcaatccag ggcattcctg
1201gattggctag tggtataatt acagagaatc tttggagtaa ttacctaccc aagggagaga
1261tcatcgaaaa gccttcagcc aaatcttctg atgtcttagg cagcttaaac catgaatatg
1321ttcttgttga catcaccacc tccttcacgc ttctggtggg aatcttcttt ccctctgtta
1381caggtatcat ggctggatca aacagatctg gagatctgaa agatgctcag aagtctattc
1441cgattggtac tatccttgcc atcctgacca cctcctttgt tttagattta agcaatgttg
1501tcctttttgg tgcatgtatt gaaggggttg ttctcagaga caagttcggt gatgctgtga
1561aaggtaattt ggtggtaggc accttatctt ggccatcccc atgggtgatt gttattggct
1621ccttcttttc aacatgtggg gctggacttc agagcctcac aggtgcaccg aggctgctac
1681aagctattgc caaggataac atcataccgt ttctgagggt ttttggccac agcaaagcca
1741atggggaacc tacctgggct ttacttctaa ctgctgccat tgcagagctt ggaatactca
1801ttgcctccct ggatcttgtg gccccaattc tttccatgtt ttttctcatg tgttacctct
1861ttgtaaactt ggcatgtgcc ttgcaaacat tacttcgaac acccaactgg agaccccgat
1921tccgctacta ccattgggcc ctttctttca tgggaatgag tatctgtctg gctctgatgt
1981tcatttcttc ctggtattat gccattgtag ccatggtaat agctggtatg atctacaagt
2041acattgaata ccaaggagct gagaaagaat ggggtgatgg tatccgtggg ctgtccctca
2101gtgcagcccg gtttgctttg cttcgattgg aggaaggacc tccacacact aaaaactgga
2161ggcctcagtt gcttgtatta ctgaaactag atgaagactt acatgtcaag catcctcgcc
2221tcctcacctt tgcctcacag ctcaaagcag gaaaaggtct cactattgtg ggctctgtca
2281tcgtggggaa cttcctagag aactacggtg aagctttagc tgctgagcag accataaagc
2341acctaatgga ggcagagaag gtaaaaggat tctgccagct ggtggtggcc gccaagctga
2401gggagggcat ttcccacctc atccagtcat gtggccttgg gggcatgaag cacaacacgg
2461tggtgatggg ctggcctaat ggctggcgtc aaagcgaaga tgcccgcgct tggaagactt
2521ttattggcac agttcgagtg acaactgctg cccatcttgc actgctggtg gctaaaaaca
2581tctccttctt tcccagcaat gtggagcaat tttctgaggg caacattgat gtgtggtgga
2641ttgtgcatga tggggggatg cttatgctac taccattcct actgaaacag cacaaggtgt
2701ggcgaaagtg cagcatacgg atcttcacag tagcccaatt agaagacaac agtatccaaa
2761tgaagaagga cctagccacc ttcctatatc acttacgcat tgaggcggag gtagaagtgg
2821tggagatggt gagaaagctg agtttgagat acaagagcat gacagtgata tatcagcata
2881tacttacgag cgcactttnn ccaactttct tgtacaaagt tggcattata agaaagcatt
2941gcttatcaat ttgttgcaac gaac

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