Construct: ORF TRCN0000491463

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014635.2_s317c1
Derived from:
ccsbBroadEn_07245
DNA Barcode:
ACCCCGGAACCGCCACCCGCAATG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PPFIBP2 (8495)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000491463
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8495 PPFIBP2 PPFIA binding protein 2 NM_001351862.1 99.8% 99.8% (many diffs)
2 human 8495 PPFIBP2 PPFIA binding protein 2 NM_003621.4 99.8% 99.8% (many diffs)
3 human 8495 PPFIBP2 PPFIA binding protein 2 NM_001351856.1 99.6% 99.6% (many diffs)
4 human 8495 PPFIBP2 PPFIA binding protein 2 NM_001351855.1 98.6% 98.5% (many diffs)
5 human 8495 PPFIBP2 PPFIA binding protein 2 XM_011520416.3 97.4% 96.7% (many diffs)
6 human 8495 PPFIBP2 PPFIA binding protein 2 XM_011520415.3 96.6% 96.4% (many diffs)
7 human 8495 PPFIBP2 PPFIA binding protein 2 XM_005253177.3 95.3% 94.9% (many diffs)
8 human 8495 PPFIBP2 PPFIA binding protein 2 NM_001351854.1 95.2% 94.8% (many diffs)
9 human 8495 PPFIBP2 PPFIA binding protein 2 XM_006718349.3 94.1% 93.7% (many diffs)
10 human 8495 PPFIBP2 PPFIA binding protein 2 XM_011520413.2 94.1% 93.7% (many diffs)
11 human 8495 PPFIBP2 PPFIA binding protein 2 XM_011520414.2 94.1% 93.7% (many diffs)
12 human 8495 PPFIBP2 PPFIA binding protein 2 NM_001351853.1 94.1% 93.6% (many diffs)
13 human 8495 PPFIBP2 PPFIA binding protein 2 NM_001351860.1 91.2% 87.6% (many diffs)
14 human 8495 PPFIBP2 PPFIA binding protein 2 NM_001351861.1 90.5% 89.5% (many diffs)
15 human 8495 PPFIBP2 PPFIA binding protein 2 NM_001351859.1 89.4% 88.2% (many diffs)
16 human 8495 PPFIBP2 PPFIA binding protein 2 XM_006718352.2 86.4% 85% (many diffs)
17 human 8495 PPFIBP2 PPFIA binding protein 2 NM_001351858.1 86.4% 84.9% (many diffs)
18 human 8495 PPFIBP2 PPFIA binding protein 2 NM_001256568.1 86.3% 86.1% (many diffs)
19 human 8495 PPFIBP2 PPFIA binding protein 2 XM_011520417.2 86% 82.3% (many diffs)
20 human 8495 PPFIBP2 PPFIA binding protein 2 NM_001351857.1 85.4% 84% (many diffs)
21 human 8495 PPFIBP2 PPFIA binding protein 2 NM_001256569.1 82.4% 81.8% (many diffs)
22 human 8495 PPFIBP2 PPFIA binding protein 2 XM_024448725.1 81.8% 81.8% (many diffs)
23 human 8495 PPFIBP2 PPFIA binding protein 2 XM_011520418.2 81.4% 80.7% (many diffs)
24 human 8495 PPFIBP2 PPFIA binding protein 2 XM_006718353.2 77.7% 76.6% (many diffs)
25 human 8495 PPFIBP2 PPFIA binding protein 2 XM_011520420.2 77.1% 76.8% (many diffs)
26 human 8495 PPFIBP2 PPFIA binding protein 2 XM_017018447.1 75.1% 74.7% (many diffs)
27 human 8495 PPFIBP2 PPFIA binding protein 2 NR_147792.1 72.2% (many diffs)
28 mouse 19024 Ppfibp2 PTPRF interacting protein, ... NM_008905.2 85.7% 88.1% (many diffs)
29 mouse 19024 Ppfibp2 PTPRF interacting protein, ... NM_001163557.1 83.5% 85.7% (many diffs)
30 mouse 19024 Ppfibp2 PTPRF interacting protein, ... XM_006507444.2 83.4% 85.8% (many diffs)
31 mouse 19024 Ppfibp2 PTPRF interacting protein, ... XM_006507443.2 82.4% 84.7% (many diffs)
32 mouse 19024 Ppfibp2 PTPRF interacting protein, ... XM_006507457.3 80.3% 82.4% (many diffs)
33 mouse 19024 Ppfibp2 PTPRF interacting protein, ... XM_006507445.3 77.8% 79.8% (many diffs)
34 mouse 19024 Ppfibp2 PTPRF interacting protein, ... XM_006507446.2 76.5% 79.8% (many diffs)
35 mouse 19024 Ppfibp2 PTPRF interacting protein, ... XM_006507456.3 70.9% 73.4% (many diffs)
36 mouse 19024 Ppfibp2 PTPRF interacting protein, ... XM_006507448.3 70% 72.4% (many diffs)
37 mouse 19024 Ppfibp2 PTPRF interacting protein, ... XM_006507449.3 70% 72.4% (many diffs)
38 mouse 19024 Ppfibp2 PTPRF interacting protein, ... XM_006507450.3 70% 72.4% (many diffs)
39 mouse 19024 Ppfibp2 PTPRF interacting protein, ... XM_006507452.3 69.9% 72.5% (many diffs)
40 mouse 19024 Ppfibp2 PTPRF interacting protein, ... XM_006507453.1 69.9% 72.5% (many diffs)
41 mouse 19024 Ppfibp2 PTPRF interacting protein, ... XM_006507454.1 69.9% 72.5% (many diffs)
42 mouse 19024 Ppfibp2 PTPRF interacting protein, ... XM_006507455.3 69.9% 72.5% (many diffs)
43 mouse 19024 Ppfibp2 PTPRF interacting protein, ... XM_006507451.1 68.7% 67.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2694
ORF length:
2628
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ttctgatgct agtcatgcgc tggaagctgc cctggagcaa atggacggga
121tcattgcagg cactaaaaca ggtgcagatc ttagtgatgg tacttgtgag cctggactgg
181cttccccggc ctcctacatg aaccccttcc cggtgctcca tctcatcgag gacttgaggc
241tggccttgga gatgctggag cttcctcagg agagagcagc cctcctgagc cagatccctg
301gcccaacagc tgcctacata aaggaatggt ttgaagagag cttgtcccag gtaaaccacc
361acagtgctgc tagtaatgaa acctaccagg aacgcttggc acgtctagaa ggggataagg
421agtccctcat attgcaggtg agtgtcatca cagaccaagt agaagcccag ggagaaaaga
481ttcgagacct ggaagtgtgt ctggaaggac accaggtgaa actcaatgct gctgaagaga
541tgcttcaaca ggagctgcta agccgcacat ctcttgagac ccagaagctc gatctgatga
601ctgaagtgtc tgagctgaag ctcaagctgg ttggcatgga gaaggagcag agagagcagg
661aggagaagca gagaaaagca gaggagttac tgcaagagct caggcacctc aaaatcaaag
721tggaagagtt ggaaaatgaa aggaatcagt atgaatggaa gctaaaggcc actaaggctg
781aagtcgccca gctgcaagaa caggtggccc tgaaagatgc agaaattgag cgtctgcaca
841gccagctctc ccggacagca gctctccaca gtgagagtca cacagagaga gaccaagaaa
901ttcaacgtct gaaaatgggg atggaaactt tgctgcttgc caatgaagat aaggaccgtc
961ggatagagga gcttacgggg ctgttaaacc agtaccggaa ggtaaaggag attgtgatgg
1021tcactcaagg gccttcggag agaactctct caatcaatga agaagaaccg gagggaggtt
1081tcagcaagtg gaacgctaca aataaggacc ctgaagaatt atttaaacaa gagatgcctc
1141caagatgtag ctctcctaca gtggggccac ctccattgcc acagaaatca ctggaaacca
1201gggctcagaa aaagctctct tgtagtctag aagacttgag aagtgaatct gtggataagt
1261gtatggatgg gaaccagccc ttcccggtgt tagaacccaa ggacagccct ttcttggcgg
1321agcacaaata tcccacttta cctgggaagc tttcaggagc cacgcccaat ggagaggctg
1381ccaaatctcc tcccaccatc tgccagcctg acgccacggg gagcagcctg ctgaggctga
1441gagacacaga aagtggctgg gatgacactg ctgtggtcaa tgacctctca tccacatcat
1501cgggcactga atcaggtcct cagtctcctc tgacaccaga tggtaaacgg aatcccaaag
1561gcattaagaa gttctgggga aaaatccgaa gaactcagtc aggaaatttc tacactgaca
1621cgctggggat ggcagagttt cgacgaggtg ggctccgggc aaccgcaggg ccaagactct
1681ctaggaccag ggactccaag ggacagaaaa gtgacgccaa tgcccccttt gcccagtgga
1741gcacagagcg tgtgtgtgca tggctggagg actttggcct ggctcagtat gtgatctttg
1801ccaggcagtg ggtatcttct ggccacacct tattgacagc cacccctcag gacatggaaa
1861aggagctagg aattaagcac ccactccaca ggaagaagct tgttttagca gtgaaagcca
1921tcaacaccaa acaggaggag aagtctgcac tgctagacca catttgggtg acaaggtggc
1981ttgatgatat tggcttaccc cagtacaaag accagtttca tgaatctaga gttgacggac
2041gaatgctgca atacctaact gtgaacgatt tactcttctt aaaagtcacc agccaactac
2101atcatctcag catcaaatgt gccattcacg tgctgcatgt caacaagttc aacccccact
2161gcctgcaccg gcggccagct gatgagagta acctttctcc ttcagaagtt gtacagtggt
2221ccaaccacag ggtgatggag tggttacgat ctgtggacct ggcagagtat gcacccaatc
2281ttcgagggag tggagtccat ggaggcctca ttatcctgga gccacgcttc actggggaca
2341ccctggctat gcttctcaac atccccccac aaaagacgct cctcaggcgc cacctgacca
2401ccaagttcaa tgccttgatt ggTCCGGAGG CTGAACAGGA AAAGCGAGAG AAAATGGCCT
2461CACCAGCTTA CACACCACTG ACCACCACAG CCAAAGTCCG GCCAAGGAAA CTAGGATTTT
2521CACACTTCGG AAACATAAGA AAAAAGAAGT TCGATGAATC GACGGACTAC ATTTGCCCAA
2581TGGAGCCCAG TGACGGTGTC AGTGATAGTC ACAGGGTCTA CAGTGGCTAC CGGGGCCTCA
2641GCCCCCTTGA TGCCCCTGAA CTGGATGGGC TGGACCAGGT GGGACAGATC AGCTGCCCAA
2701CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
2761ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
2821TATCTTGTGG AAAGGACGAA CCCCGGAACC GCCACCCGCA ATGACGCGTT AAGTCgacaa
2881tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)