Transcript: Mouse NM_207655.2

Mus musculus epidermal growth factor receptor (Egfr), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Egfr (13649)
Length:
5983
CDS:
281..3913

Additional Resources:

NCBI RefSeq record:
NM_207655.2
NBCI Gene record:
Egfr (13649)

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_207655.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000055220 CCAAGCCAAATGGCATATTTA pLKO.1 3822 CDS 100% 15.000 21.000 N Egfr n/a
2 TRCN0000334048 CCAAGCCAAATGGCATATTTA pLKO_005 3822 CDS 100% 15.000 21.000 N Egfr n/a
3 TRCN0000023479 CCTCTGCAATATGGATACTAT pLKO.1 745 CDS 100% 5.625 7.875 N Egfr n/a
4 TRCN0000055219 GCCAATAATGTCTGCCACCTA pLKO.1 2117 CDS 100% 2.640 2.112 N Egfr n/a
5 TRCN0000023481 CCTGTCCAACTATGGGACAAA pLKO.1 643 CDS 100% 0.495 0.396 N Egfr n/a
6 TRCN0000055222 GCATAGGCATTGGTGAATTTA pLKO.1 1296 CDS 100% 15.000 10.500 N Egfr n/a
7 TRCN0000023483 GCTTTCGAGAACCTAGAAATA pLKO.1 1535 CDS 100% 13.200 9.240 N Egfr n/a
8 TRCN0000348123 GCTTTCGAGAACCTAGAAATA pLKO_005 1535 CDS 100% 13.200 9.240 N Egfr n/a
9 TRCN0000121329 CAGCATGTCAAGATCACAGAT pLKO.1 2831 CDS 100% 4.950 3.465 N EGFR n/a
10 TRCN0000023480 GCAAACACAATAAACTGGAAA pLKO.1 1694 CDS 100% 4.950 3.465 N Egfr n/a
11 TRCN0000348190 GCAAACACAATAAACTGGAAA pLKO_005 1694 CDS 100% 4.950 3.465 N Egfr n/a
12 TRCN0000055218 GCTGGATGATAGATGCTGATA pLKO.1 3135 CDS 100% 4.950 3.465 N Egfr n/a
13 TRCN0000334115 GCTGGATGATAGATGCTGATA pLKO_005 3135 CDS 100% 4.950 3.465 N Egfr n/a
14 TRCN0000055221 GCCTATCAAGTGGATGGCTTT pLKO.1 2914 CDS 100% 4.050 2.835 N Egfr n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_207655.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14622 pDONR223 0% 84.7% 90.3% None (many diffs) n/a
2 TRCN0000470680 TTTCCTGTACTCAGTCAATTTGTA pLX_317 10.3% 84.7% 90.3% V5 (many diffs) n/a
3 ccsbBroad304_14622 pLX_304 25.5% 72.6% 23.3% V5 (not translated due to prior stop codon) (many diffs) n/a
4 TRCN0000489587 TTCCGACATTAAGCCGCAACCGAG pLX_317 11.6% 84.7% 90.3% V5 (many diffs) n/a
5 TRCN0000487903 TTTGATCTATAGGTAATTAATTAT pLX_317 8.6% 84.6% 90.2% V5 (not translated due to prior stop codon) (many diffs) n/a
6 TRCN0000491390 TACATTGGTATCCTAGTAACCCAG pLX_317 8.6% 84.6% 90.2% V5 (not translated due to prior stop codon) (many diffs) n/a
7 TRCN0000489590 AGGCTGCTTTATAAGACAGAGCAC pLX_317 11.8% 84.6% 90.2% V5 (not translated due to prior stop codon) (many diffs) n/a
8 TRCN0000489889 TCAAGTATCAGACCACTAAACATC pLX_317 11.3% 84.6% 90.1% V5 (not translated due to prior stop codon) (many diffs) n/a
9 TRCN0000489511 CTCATTCCAAATATTCTTATAAAG pLX_317 10.6% 84.4% 82.8% V5 (not translated due to prior stop codon) (many diffs) n/a
10 TRCN0000488391 ACTAGCAATTCCGCAGTGTATGAG pLX_317 9.2% 84.3% 89.9% V5 (not translated due to prior stop codon) (many diffs) n/a
11 TRCN0000489095 ACACCCGTTACCGGACACTAAACA pLX_317 9.2% 84.2% 89.7% V5 (not translated due to prior stop codon) (many diffs) n/a
12 TRCN0000491764 CACTCATGTCGTGGCCCAAAAAAT pLX_317 6.2% 84.1% 89.6% V5 (not translated due to prior stop codon) (many diffs) n/a
13 TRCN0000475806 AGCGTCACAGGCTAACATACTCCG pLX_317 9.6% 76.4% 79.3% V5 (many diffs) n/a
14 ccsbBroadEn_13848 pDONR223 100% 76.3% 79.1% None (many diffs) n/a
15 ccsbBroad304_13848 pLX_304 0% 76.3% 79.1% V5 (many diffs) n/a
16 TRCN0000488104 TATGTACGTCCGGGTACTGATTCC pLX_317 20.9% 37.8% V5 (not translated due to prior stop codon) (many diffs) n/a
Download CSV

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