Construct: ORF ccsbBroad304_05629
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007808.1_s304c1, BRDN0000401741
- Derived from:
- ccsbBroadEn_05629
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF321P (399669)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_05629
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100529240 | ZNF816-ZNF321P | ZNF816-ZNF321P readthrough | NM_001202473.1 | 70.3% | 70.3% | 1_207del |
| 2 | human | 170958 | ZNF525 | zinc finger protein 525 | NM_001348157.2 | 33% | 27.5% | (many diffs) |
| 3 | human | 90333 | ZNF468 | zinc finger protein 468 | XM_017027444.1 | 31.3% | 25.7% | (many diffs) |
| 4 | human | 55762 | ZNF701 | zinc finger protein 701 | NM_018260.2 | 30.9% | 24.9% | (many diffs) |
| 5 | human | 170958 | ZNF525 | zinc finger protein 525 | NM_001348156.2 | 30.5% | 25.4% | (many diffs) |
| 6 | human | 91661 | ZNF765 | zinc finger protein 765 | NM_001350495.1 | 30.3% | 24.4% | (many diffs) |
| 7 | human | 90333 | ZNF468 | zinc finger protein 468 | NM_001008801.2 | 28.1% | 23.1% | (many diffs) |
| 8 | human | 91661 | ZNF765 | zinc finger protein 765 | NM_001040185.3 | 27.2% | 21.9% | (many diffs) |
| 9 | human | 90333 | ZNF468 | zinc finger protein 468 | XM_017027443.1 | 27.1% | 22.3% | (many diffs) |
| 10 | human | 55762 | ZNF701 | zinc finger protein 701 | NM_001172655.1 | 27% | 21.8% | (many diffs) |
| 11 | human | 55762 | ZNF701 | zinc finger protein 701 | XM_011527092.1 | 27% | 21.8% | (many diffs) |
| 12 | human | 147660 | ZNF578 | zinc finger protein 578 | NM_001099694.2 | 24.5% | 20.5% | (many diffs) |
| 13 | human | 147660 | ZNF578 | zinc finger protein 578 | NM_001366182.1 | 24.5% | 20.5% | (many diffs) |
| 14 | human | 126017 | ZNF813 | zinc finger protein 813 | NM_001004301.4 | 24.1% | 20.7% | (many diffs) |
| 15 | human | 81856 | ZNF611 | zinc finger protein 611 | NM_001161501.1 | 22.9% | 18.7% | (many diffs) |
| 16 | human | 344787 | ZNF860 | zinc finger protein 860 | NM_001137674.3 | 22.6% | 18.6% | (many diffs) |
| 17 | human | 344787 | ZNF860 | zinc finger protein 860 | XM_017006299.1 | 22.6% | 18.6% | (many diffs) |
| 18 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_001369762.1 | 22.1% | 18.4% | (many diffs) |
| 19 | human | 7576 | ZNF28 | zinc finger protein 28 | XM_024451688.1 | 22.1% | 18.4% | (many diffs) |
| 20 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_017026800.2 | 21.6% | 18.3% | (many diffs) |
| 21 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_001369765.1 | 21.6% | 18% | (many diffs) |
| 22 | human | 125893 | ZNF816 | zinc finger protein 816 | NM_001031665.3 | 21.4% | 18.2% | (many diffs) |
| 23 | human | 125893 | ZNF816 | zinc finger protein 816 | NM_001202456.2 | 21.4% | 18.2% | (many diffs) |
| 24 | human | 125893 | ZNF816 | zinc finger protein 816 | NM_001202457.2 | 21.4% | 18.2% | (many diffs) |
| 25 | human | 399669 | ZNF321P | zinc finger protein 321, ps... | NR_037805.1 | 21% | 1_71del;564_2334del | |
| 26 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_001369764.1 | 20.7% | 16.9% | (many diffs) |
| 27 | human | 81856 | ZNF611 | zinc finger protein 611 | NM_001161499.2 | 20.6% | 16.8% | (many diffs) |
| 28 | human | 81856 | ZNF611 | zinc finger protein 611 | NM_001161500.1 | 20.6% | 16.8% | (many diffs) |
| 29 | human | 81856 | ZNF611 | zinc finger protein 611 | NM_030972.3 | 20.6% | 16.8% | (many diffs) |
| 30 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_001369763.1 | 20.6% | 17.2% | (many diffs) |
| 31 | human | 388559 | ZNF888 | zinc finger protein 888 | NM_001310127.1 | 20.5% | 17.4% | (many diffs) |
| 32 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_005259451.5 | 20.5% | 17.4% | (many diffs) |
| 33 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_017026799.2 | 20.5% | 17.4% | (many diffs) |
| 34 | human | 7576 | ZNF28 | zinc finger protein 28 | NM_006969.5 | 20.5% | 17.1% | (many diffs) |
| 35 | human | 7576 | ZNF28 | zinc finger protein 28 | XM_011527262.2 | 20.5% | 17.1% | (many diffs) |
| 36 | human | 162966 | ZNF600 | zinc finger protein 600 | NM_198457.4 | 19.8% | 16% | (many diffs) |
| 37 | human | 388561 | ZNF761 | zinc finger protein 761 | NM_001008401.4 | 19% | 15.1% | (many diffs) |
| 38 | human | 388561 | ZNF761 | zinc finger protein 761 | NM_001289951.2 | 19% | 15.1% | (many diffs) |
| 39 | human | 388561 | ZNF761 | zinc finger protein 761 | NM_001289952.1 | 19% | 15.1% | (many diffs) |
| 40 | human | 110116772 | ZNF765-ZNF761 | ZNF765-ZNF761 readthrough | NM_001350496.2 | 19% | 15.1% | (many diffs) |
| 41 | human | 162966 | ZNF600 | zinc finger protein 600 | NM_001321866.2 | 18.1% | 14.6% | (many diffs) |
| 42 | human | 162966 | ZNF600 | zinc finger protein 600 | NM_001321867.2 | 18.1% | 14.6% | (many diffs) |
| 43 | human | 162966 | ZNF600 | zinc finger protein 600 | XM_017026390.1 | 18.1% | 14.6% | (many diffs) |
| 44 | human | 162966 | ZNF600 | zinc finger protein 600 | XM_017026391.1 | 18.1% | 14.6% | (many diffs) |
| 45 | human | 162966 | ZNF600 | zinc finger protein 600 | XM_017026392.1 | 18.1% | 14.6% | (many diffs) |
| 46 | human | 388559 | ZNF888 | zinc finger protein 888 | XM_017026798.2 | 17.7% | 15% | (many diffs) |
| 47 | human | 388558 | ZNF808 | zinc finger protein 808 | NM_001363550.1 | 17.3% | 14.1% | (many diffs) |
| 48 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_005258909.4 | 17.3% | 14.1% | (many diffs) |
| 49 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_024451509.1 | 17.3% | 14.1% | (many diffs) |
| 50 | human | 388558 | ZNF808 | zinc finger protein 808 | NM_001039886.4 | 16% | 13% | (many diffs) |
| 51 | human | 388558 | ZNF808 | zinc finger protein 808 | NM_001321424.1 | 16% | 13% | (many diffs) |
| 52 | human | 388558 | ZNF808 | zinc finger protein 808 | NM_001321425.1 | 16% | 13% | (many diffs) |
| 53 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_024451506.1 | 16% | 13% | (many diffs) |
| 54 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_024451507.1 | 16% | 13% | (many diffs) |
| 55 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_024451508.1 | 16% | 13% | (many diffs) |
| 56 | human | 91664 | ZNF845 | zinc finger protein 845 | NM_001321522.1 | 15.4% | 13.5% | (many diffs) |
| 57 | human | 91664 | ZNF845 | zinc finger protein 845 | NM_001321523.1 | 15.4% | 13.5% | (many diffs) |
| 58 | human | 91664 | ZNF845 | zinc finger protein 845 | NM_001321524.1 | 15.4% | 13.5% | (many diffs) |
| 59 | human | 91664 | ZNF845 | zinc finger protein 845 | NM_138374.3 | 15.4% | 13.5% | (many diffs) |
| 60 | human | 7576 | ZNF28 | zinc finger protein 28 | XM_024451686.1 | 14.6% | 12% | (many diffs) |
| 61 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753718.2 | 14.4% | (many diffs) | |
| 62 | human | 79986 | ZNF702P | zinc finger protein 702, ps... | NR_003578.1 | 13.5% | (many diffs) | |
| 63 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753717.2 | 12.1% | (many diffs) | |
| 64 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753715.2 | 12.1% | (many diffs) | |
| 65 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753716.2 | 11.4% | (many diffs) | |
| 66 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_935832.3 | 10.2% | (many diffs) | |
| 67 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_002958314.1 | 9.8% | (many diffs) | |
| 68 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102301.2 | 9.4% | (many diffs) | |
| 69 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102300.2 | 9.2% | (many diffs) | |
| 70 | human | 90333 | ZNF468 | zinc finger protein 468 | NR_102299.2 | 9.2% | (many diffs) | |
| 71 | human | 7576 | ZNF28 | zinc finger protein 28 | NR_163139.1 | 8.9% | (many diffs) | |
| 72 | human | 170958 | ZNF525 | zinc finger protein 525 | NR_145445.2 | 8.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 561
- ORF length:
- 492
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gatgaaggag ttctcatcca cagcgcaagg caatacagaa gtgatccaca 121 cagggacatt gcaaagacat gaaagtcatc acattagaga tttttgcttc caggaaattg 181 agaaagatat tcataacttt gagtttcagt ggcaagaaga ggaaaggaat ggtcacgaag 241 cacccatgac agaaatcaaa gagttgactg gtagtacaga ccgacatgat caaaggcatg 301 ctggaaacaa gcctattaaa gatcagcttg gatccagctt tcattcgcat ctgcctgaac 361 tccacatatt tcagcctgaa tggaaaattg gtaatcaagt tgagaagtct atcatcaatg 421 cctccttaat tttgacatcc caaagaattt cttgtagtcc caaaacccgt atttctaata 481 actatgggaa taattccctc cattcttcat tacccataca aaaattggga agtacacatg 541 agagaaaaat ctttccaatg ttgccaactt tcttgtacaa agtggttggt aagcctatcc 601 ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg 661 ttaagtcgac aatcaacctc tggatta