Construct: ORF ccsbBroad304_02790

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004664.1_s304c1, BRDN0000411137
Derived from:
ccsbBroadEn_02790
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RBFOX2 (23543)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02790
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001031695.4 100% 100%
2 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349997.2 99.7% 99.7% 252_254delGCA
3 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001082576.3 98.9% 98.6% 751_752insGTCTCCCTTTAG
4 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028696.1 98.6% 98.4% 252_254delGCA;754_755insGTCTCCCTTTAG
5 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_024452191.1 97.2% 96.5% (many diffs)
6 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349998.2 96.4% 77.8% 937_968del;1173_1182delTGAAGTGACG
7 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724191.1 96.2% 77.6% 252_254delGCA;940_971del;1176_1185delTGAAGTGACG
8 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001082577.3 95.6% 79.4% 896_897ins40;1101_1110delTGAAGTGACG
9 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349983.2 95.4% 76.6% 751_752insGTCTCCCTTTAG;925_956del;1161_1170delTGAAGTGACG
10 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028693.1 95.1% 76.4% (many diffs)
11 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028698.1 94.6% 78.2% 751_752insGTCTCCCTTTAG;884_885ins40;1089_1098delTGAAGTGACG
12 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724192.2 94.5% 75.7% (many diffs)
13 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_014309.4 94.3% 78% (many diffs)
14 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028691.1 94% 75.2% (many diffs)
15 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028690.1 93.7% 75.1% (many diffs)
16 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349989.2 93.7% 92.7% (many diffs)
17 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349990.2 92.7% 91.5% (many diffs)
18 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349996.2 92.2% 91% (many diffs)
19 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724194.2 91.3% 73% 0_1ins60;877_908del;1113_1122delTGAAGTGACG
20 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028697.1 91.3% 73% 0_1ins60;877_908del;1113_1122delTGAAGTGACG
21 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_024452189.1 91.1% 72.8% (many diffs)
22 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_024452190.1 91.1% 72.8% (many diffs)
23 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028686.1 90.9% 73.4% (many diffs)
24 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349991.2 90.5% 72.3% (many diffs)
25 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_024452192.1 90.3% 71.8% (many diffs)
26 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724189.3 90.3% 72.1% (many diffs)
27 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349992.2 89.6% 73.6% (many diffs)
28 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349982.2 89.6% 71.2% (many diffs)
29 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349994.2 88.6% 72.4% (many diffs)
30 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_024452188.1 84.9% 67.9% (many diffs)
31 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028687.2 84.7% 67.8% (many diffs)
32 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001082579.2 83.7% 82.8% (many diffs)
33 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001082578.3 83.5% 82.7% (many diffs)
34 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_005261432.2 82.8% 81.7% (many diffs)
35 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349999.1 82.6% 81.5% (many diffs)
36 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724187.2 82% 80.3% (many diffs)
37 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349995.2 82% 66.1% (many diffs)
38 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724186.2 81.2% 65.2% (many diffs)
39 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_005261430.2 81.2% 79.2% (many diffs)
40 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724185.2 81% 65.1% (many diffs)
41 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_005261429.2 80.3% 64.2% (many diffs)
42 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_005261428.2 80.1% 64% (many diffs)
43 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724188.2 80% 65.8% (many diffs)
44 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028688.1 79.2% 64.9% (many diffs)
45 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_005261433.2 79.1% 64.8% (many diffs)
46 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724193.3 69% 67.6% (many diffs)
47 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_001110828.2 93.7% 98.6% (many diffs)
48 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_001110830.2 92.7% 97.3% (many diffs)
49 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_001110829.2 90.9% 94.5% (many diffs)
50 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521593.3 88.4% 78.2% (many diffs)
51 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_017316812.1 86.4% 90.3% (many diffs)
52 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_001286417.1 85.4% 79% (many diffs)
53 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_001286419.1 83.1% 86.6% (many diffs)
54 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521598.2 79.8% 85.4% (many diffs)
55 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521584.3 78.5% 72.5% (many diffs)
56 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_053104.6 78.5% 82.1% (many diffs)
57 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521583.3 78.3% 72.3% (many diffs)
58 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521577.2 77.8% 81.2% (many diffs)
59 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_001110827.2 77.6% 81% (many diffs)
60 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521586.3 77.4% 71.2% (many diffs)
61 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521574.2 77.1% 79.7% (many diffs)
62 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521585.3 76.8% 70.5% (many diffs)
63 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521576.2 76.2% 78.6% (many diffs)
64 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521569.2 76.1% 65.3% (many diffs)
65 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_017316811.1 75.9% 69.7% (many diffs)
66 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521582.3 75.9% 69.7% (many diffs)
67 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_017316810.1 75.6% 69.4% (many diffs)
68 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521570.2 75.4% 64.4% (many diffs)
69 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_017316809.1 75.3% 64.3% (many diffs)
70 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521599.2 75.2% 66.3% (many diffs)
71 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521580.2 75% 66.1% (many diffs)
72 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521568.2 74.8% 62.9% (many diffs)
73 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_175387.3 74.1% 65% (many diffs)
74 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521588.3 73.8% 67.8% (many diffs)
75 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521579.3 73.7% 67.5% (many diffs)
76 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521578.3 73.5% 67.3% (many diffs)
77 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_001286418.1 69.7% 73.4% (many diffs)
78 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521587.2 69.6% 71.9% (many diffs)
79 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521567.3 67.6% 63.4% (many diffs)
80 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521565.3 66.9% 61.4% (many diffs)
81 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521564.3 66.7% 61.2% (many diffs)
82 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521566.3 65.9% 60.3% (many diffs)
83 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521592.2 62.5% 63.3% (many diffs)
84 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521571.3 60.6% 55.2% (many diffs)
85 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521597.3 31.7% 31.1% (many diffs)
86 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521596.3 31.3% 31.6% (many diffs)
87 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XR_384057.2 14.9% (many diffs)
88 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XR_001781584.1 14.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1206
ORF length:
1140
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga gaaaaagaaa atggtaactc agggtaacca ggagccgaca acaactcctg
121acgcaatggt tcagcctttt actaccatcc catttccacc acctccgcag aatggaattc
181ccacagagta tggggtgcca cacactcaag actatgccgg ccagaccggt gagcataacc
241tgacactcta cggaagtacg caagcccacg gggagcagag cagcaactca cccagcacac
301aaaatggatc tcttacgaca gaaggtggag cacagacaga cggccagcag tcacagacac
361aaagtagtga aaattcagag agtaaatcta ccccgaaacg gctgcatgtc tctaatattc
421ctttccgctt ccgggaccct gacctccggc agatgtttgg gcagtttggc aaaatcctag
481atgtagaaat aatctttaat gaacgtggct ctaagggatt cgggttcgta actttcgaga
541atagtgctga tgcagacagg gccagggaga aattacacgg caccgtggta gagggccgta
601aaatcgaggt gaataatgct acagcacgtg taatgaccaa taagaagatg gtcacaccat
661atgcaaatgg ttggaaatta agcccagtag ttggagctgt atatggtccg gagttatatg
721cagcatccag ctttcaagca gatgtgtccc taggcaatga tgcagcagtg cccctatcag
781gaagaggggg tatcaacact tacattcctt taatcagtct ccctttagtt cctggcttcc
841cttaccctac tgcagccacc acggcagccg ctttcagagg agcccatttg aggggcagag
901ggcggacagt atatggtgca gtccgagcgg tacctccaac agccatcccc gcctatccag
961gtgtggttta ccaggacgga ttttacggtg ctgacctcta tggtggatat gcagcctaca
1021gatatgcaca gcctgctact gcaaccgcag ccaccgctgc tgcagccgct gcagccgctt
1081acagtgacgg ttatggcagg gtgtacacag ccgaccccta ccatgccctt gcccctgccg
1141ctagctatgg agttggcgct gtggcgagtt tataccgagg tggctacagc cgatttgccc
1201cctactgccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
1261gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
1321acctctggat ta

Download FASTA (ORF) (Full)