Construct: ORF ccsbBroad304_11745

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005517.1_s304c1, BRDN0000403034
Derived from:
ccsbBroadEn_11745
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RBFOX2 (23543)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11745
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001082576.3 95.1% 94.9% 396_449del;995C>T
2 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028696.1 94.8% 94.6% 252_254delGCA;399_452del;998C>T
3 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001031695.4 94.1% 93.6% 396_449del;752_763del;1007C>T
4 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349997.2 93.8% 93.4% (many diffs)
5 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_024452191.1 93.3% 92.8% (many diffs)
6 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349983.2 91.7% 73.2% (many diffs)
7 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028693.1 91.4% 73% (many diffs)
8 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349998.2 90.7% 72.3% (many diffs)
9 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028698.1 90.7% 74.6% (many diffs)
10 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724191.1 90.5% 72.1% (many diffs)
11 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_014309.4 90.5% 74.4% (many diffs)
12 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001082577.3 89.8% 73.6% (many diffs)
13 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349990.2 89% 87.9% (many diffs)
14 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349996.2 89% 87.9% (many diffs)
15 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724192.2 88.8% 70.2% (many diffs)
16 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028691.1 88.4% 69.8% (many diffs)
17 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028690.1 88.2% 69.7% (many diffs)
18 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349989.2 88.1% 86.8% (many diffs)
19 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_024452192.1 86.5% 68.4% (many diffs)
20 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349982.2 86% 67.9% (many diffs)
21 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724194.2 85.7% 67.5% (many diffs)
22 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028697.1 85.7% 67.5% (many diffs)
23 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028686.1 85.5% 68.1% (many diffs)
24 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_024452189.1 85.4% 67.3% (many diffs)
25 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_024452190.1 85.4% 67.3% (many diffs)
26 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349991.2 85.2% 67.1% (many diffs)
27 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724189.3 84.9% 66.9% (many diffs)
28 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349994.2 84.9% 69% (many diffs)
29 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349992.2 84.1% 68.1% (many diffs)
30 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349995.2 82.3% 64.4% (many diffs)
31 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_024452188.1 79.8% 63% (many diffs)
32 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028687.2 79.6% 62.8% (many diffs)
33 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_005261432.2 79.4% 78.4% (many diffs)
34 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001349999.1 79.3% 78.2% (many diffs)
35 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001082579.2 78.7% 77.5% (many diffs)
36 human 23543 RBFOX2 RNA binding fox-1 homolog 2 NM_001082578.3 78.5% 77.3% (many diffs)
37 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_005261430.2 77.8% 75.8% (many diffs)
38 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724187.2 77.1% 75% (many diffs)
39 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_005261429.2 77% 61.2% (many diffs)
40 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_005261428.2 76.8% 61.1% (many diffs)
41 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724186.2 76.3% 60.5% (many diffs)
42 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724185.2 76.2% 60.4% (many diffs)
43 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_017028688.1 75.9% 61.8% (many diffs)
44 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_005261433.2 75.7% 61.6% (many diffs)
45 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724188.2 75% 60.9% (many diffs)
46 human 23543 RBFOX2 RNA binding fox-1 homolog 2 XM_006724193.3 64.1% 62.5% (many diffs)
47 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_001110830.2 89.2% 93.6% (many diffs)
48 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_001110828.2 88.2% 92.3% (many diffs)
49 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_001110829.2 87.4% 90.7% (many diffs)
50 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_001286419.1 85.4% 88% (many diffs)
51 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521593.3 84.9% 74.6% (many diffs)
52 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_017316812.1 83.1% 86.7% (many diffs)
53 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_001286417.1 81.8% 75.9% (many diffs)
54 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521598.2 75% 79.8% (many diffs)
55 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521577.2 74.7% 77.9% (many diffs)
56 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_001110827.2 74.5% 77.7% (many diffs)
57 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521586.3 74.2% 67.9% (many diffs)
58 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_053104.6 73.8% 76.8% (many diffs)
59 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521584.3 73.7% 67.2% (many diffs)
60 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521583.3 73.5% 67.1% (many diffs)
61 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521576.2 73.1% 75.3% (many diffs)
62 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521574.2 72.4% 74.4% (many diffs)
63 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521570.2 72.4% 61.4% (many diffs)
64 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_017316809.1 72.2% 61.2% (many diffs)
65 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521585.3 72.1% 65.3% (many diffs)
66 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_001286418.1 72% 75.4% (many diffs)
67 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521569.2 71.6% 60.5% (many diffs)
68 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_017316811.1 71.2% 64.5% (many diffs)
69 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521582.3 71.2% 64.6% (many diffs)
70 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... NM_175387.3 71% 61.8% (many diffs)
71 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521587.2 70.9% 72.3% (many diffs)
72 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_017316810.1 70.9% 64.3% (many diffs)
73 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521599.2 70.5% 61.2% (many diffs)
74 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521580.2 70.4% 61.1% (many diffs)
75 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521568.2 70.3% 58.1% (many diffs)
76 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521579.3 69.1% 62.5% (many diffs)
77 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521588.3 69% 62.5% (many diffs)
78 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521578.3 68.9% 62.4% (many diffs)
79 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521567.3 63.4% 58.7% (many diffs)
80 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521566.3 63.1% 57.4% (many diffs)
81 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521565.3 62.7% 56.8% (many diffs)
82 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521564.3 62.6% 56.7% (many diffs)
83 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521571.3 60.2% 53.3% (many diffs)
84 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521592.2 58% 58.3% (many diffs)
85 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521596.3 32.4% 29.7% (many diffs)
86 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XM_006521597.3 31.9% 29.7% (many diffs)
87 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XR_384057.2 14% (many diffs)
88 mouse 93686 Rbfox2 RNA binding protein, fox-1 ... XR_001781584.1 14% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1140
ORF length:
1074
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga gaaaaagaaa atggtaactc agggtaacca ggagccgaca acaactcctg
121acgcaatggt tcagcctttt actaccatcc catttccacc acctccgcag aatggaattc
181ccacagagta tggggtgcca cacactcaag actatgccgg ccagaccggt gagcataacc
241tgacactcta cggaagtacg caagcccacg gggagcagag cagcaactca cccagcacac
301aaaatggatc tcttacgaca gaaggtggag cacagacaga cggccagcag tcacagacac
361aaagtagtga aaattcagag agtaaatcta ccccgaaacg gctgcatgtc tctaatattc
421ctttccgctt ccgggaccct gacctccggc agatgtttgg gggattcggg ttcgtaactt
481tcgagaatag tgctgatgca gacagggcca gggagaaatt acacggcacc gtggtagagg
541gccgtaaaat cgaggtgaat aatgctacag cacgtgtaat gaccaataag aagatggtca
601caccatatgc aaatggttgg aaattaagcc cagtagttgg agctgtatat ggtccggagt
661tatatgcagc atccagcttt caagcagatg tgtccctagg caatgatgca gcagtgcccc
721tatcaggaag agggggtatc aacacttaca ttcctttaat cattcctggc ttcccttacc
781ctactgcagc caccacggca gccgctttca gaggagccca tttgaggggc agagggcgga
841cagtatatgg tgcagtccga gcggtacctc caacagccat ccccgcctat ccaggtgtgg
901tttaccagga cggattttac ggtgctgacc tctatggtgg atatgcagcc tacagatatg
961cacagcctgc tactgcaacc gcagccaccg ctgctgcagc cgctgtagcc gcttacagtg
1021acggttatgg cagggtgtac acagccgacc cctaccatgc ccttgcccct gccgctagct
1081atggagttgg cgctgtggcg agtttatacc gaggtggcta cagccgattt gccccctact
1141gcccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
1201attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
1261ggatta

Download FASTA (ORF) (Full)