Construct: ORF ccsbBroad304_15496
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016482.1_s304c1, BRDN0000410739
- Derived from:
- ccsbBroadEn_15496
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MBNL1 (4154)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15496
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 4154 | MBNL1 | muscleblind like splicing r... | NM_001314057.2 | 100% | 100% | |
2 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006435.1 | 99.6% | 99.4% | 1_4delATGCinsA |
3 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_005247474.3 | 89.7% | 89.7% | 0_1ins105 |
4 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_005247475.3 | 89.7% | 89.7% | 0_1ins105 |
5 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_005247477.5 | 89.7% | 89.7% | 0_1ins105 |
6 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_011512848.2 | 89.7% | 89.7% | 0_1ins105 |
7 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_005247464.5 | 85.5% | 85.5% | 1_171del;173_174delAAinsTG |
8 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006423.2 | 85.5% | 85.5% | 1_171del;173_174delAAinsTG |
9 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006424.2 | 85.5% | 85.5% | 1_171del;173_174delAAinsTG |
10 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_005247476.5 | 84.5% | 84.5% | 0_1ins105;529_530ins54 |
11 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006440.2 | 84.5% | 84.5% | 0_1ins105;529_530ins54 |
12 | human | 4154 | MBNL1 | muscleblind like splicing r... | NM_207293.1 | 82.5% | 82.5% | 1_171del;173_174delAAinsTG;1014_1015ins36 |
13 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_005247466.5 | 82.5% | 82.5% | 1_171del;173_174delAAinsTG;1014_1015ins36 |
14 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006425.2 | 82.5% | 82.5% | 1_171del;173_174delAAinsTG;1014_1015ins36 |
15 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006426.1 | 82.5% | 82.5% | 1_171del;173_174delAAinsTG;1014_1015ins36 |
16 | human | 4154 | MBNL1 | muscleblind like splicing r... | NM_021038.5 | 81% | 81% | 1_171del;173_174delAAinsTG;805_806ins54 |
17 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006427.2 | 81% | 81% | 1_171del;173_174delAAinsTG;805_806ins54 |
18 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006428.1 | 81% | 81% | 1_171del;173_174delAAinsTG;805_806ins54 |
19 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006429.1 | 81% | 81% | 1_171del;173_174delAAinsTG;805_806ins54 |
20 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006441.1 | 81% | 81% | 0_1ins105;529_530ins54;684_685ins36 |
21 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006442.1 | 81% | 81% | 0_1ins105;529_530ins54;684_685ins36 |
22 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_005247457.5 | 79.4% | 79.3% | 1_265del;267_268insG |
23 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_005247458.5 | 79.4% | 79.3% | 1_265del;267_268insG |
24 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_005247460.4 | 79.4% | 79.3% | 1_265del;267_268insG |
25 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_006713639.1 | 79.4% | 79.3% | 1_265del;267_268insG |
26 | human | 4154 | MBNL1 | muscleblind like splicing r... | NM_207292.3 | 78% | 78% | (many diffs) |
27 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006430.2 | 78% | 78% | (many diffs) |
28 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006431.2 | 78% | 78% | (many diffs) |
29 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_005247461.5 | 76.6% | 76.5% | 1_265del;267_268insG;1107_1108ins36 |
30 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006432.2 | 75.5% | 73.7% | (many diffs) |
31 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_005247462.5 | 75.2% | 75.1% | 1_265del;267_268insG;898_899ins54 |
32 | human | 4154 | MBNL1 | muscleblind like splicing r... | NM_001363870.1 | 72.5% | 70.3% | (many diffs) |
33 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006433.2 | 72.5% | 70.3% | (many diffs) |
34 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_005247463.5 | 72.4% | 72.3% | (many diffs) |
35 | human | 4154 | MBNL1 | muscleblind like splicing r... | NM_207297.1 | 71% | 69.2% | (many diffs) |
36 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_005247471.5 | 71% | 69.2% | (many diffs) |
37 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006436.2 | 71% | 69.2% | (many diffs) |
38 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_005247465.5 | 70.1% | 68.4% | (many diffs) |
39 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006443.1 | 69.3% | 66.8% | (many diffs) |
40 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006437.2 | 68% | 65.8% | (many diffs) |
41 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_005247467.5 | 67.3% | 65.2% | (many diffs) |
42 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_017006438.2 | 65.5% | 65.5% | (many diffs) |
43 | human | 4154 | MBNL1 | muscleblind like splicing r... | NM_207295.1 | 64% | 64% | (many diffs) |
44 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_011512847.3 | 64% | 64% | (many diffs) |
45 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_011512843.3 | 63.6% | 63.5% | 1_265del;267_268insG;437_438ins204 |
46 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_005247468.5 | 63.2% | 61.1% | (many diffs) |
47 | human | 4154 | MBNL1 | muscleblind like splicing r... | NM_207296.1 | 61.9% | 62% | (many diffs) |
48 | human | 4154 | MBNL1 | muscleblind like splicing r... | NM_207294.1 | 61% | 61% | (many diffs) |
49 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_011512849.3 | 61% | 61% | (many diffs) |
50 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_011512845.3 | 59.5% | 59.3% | (many diffs) |
51 | human | 4154 | MBNL1 | muscleblind like splicing r... | XM_011512846.3 | 56.7% | 56.6% | (many diffs) |
52 | human | 4154 | MBNL1 | muscleblind like splicing r... | XR_001740148.2 | 38.6% | (many diffs) | |
53 | human | 4154 | MBNL1 | muscleblind like splicing r... | XR_001740147.2 | 20.2% | (many diffs) | |
54 | human | 4154 | MBNL1 | muscleblind like splicing r... | XR_001740145.2 | 17.9% | (many diffs) | |
55 | human | 4154 | MBNL1 | muscleblind like splicing r... | XR_001740146.2 | 16.3% | (many diffs) | |
56 | human | 4154 | MBNL1 | muscleblind like splicing r... | XR_002959535.1 | 11% | (many diffs) | |
57 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501797.3 | 85.1% | 89.2% | (many diffs) |
58 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501798.3 | 85.1% | 89.2% | (many diffs) |
59 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501799.3 | 85.1% | 89.2% | (many diffs) |
60 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_017319665.1 | 85.1% | 89.2% | (many diffs) |
61 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501777.1 | 81% | 85% | (many diffs) |
62 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | NM_001253713.2 | 79.8% | 83.9% | (many diffs) |
63 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_017319667.1 | 79.8% | 83.9% | (many diffs) |
64 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501780.1 | 78% | 82% | (many diffs) |
65 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501786.3 | 76.8% | 80.5% | (many diffs) |
66 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501787.3 | 76.8% | 80.5% | (many diffs) |
67 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501788.3 | 76.8% | 80.5% | (many diffs) |
68 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501789.3 | 76.8% | 80.5% | (many diffs) |
69 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501790.3 | 76.8% | 80.5% | (many diffs) |
70 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501791.3 | 76.8% | 80.5% | (many diffs) |
71 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501793.3 | 76.8% | 80.5% | (many diffs) |
72 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501794.3 | 76.8% | 80.5% | (many diffs) |
73 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | NM_020007.4 | 76.5% | 80.5% | (many diffs) |
74 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_017319668.1 | 76.3% | 80.4% | (many diffs) |
75 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501772.1 | 74.1% | 77.8% | (many diffs) |
76 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501784.2 | 73.5% | 77.5% | (many diffs) |
77 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501773.1 | 71.3% | 75% | (many diffs) |
78 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501774.2 | 70% | 73.6% | (many diffs) |
79 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | NM_001253711.2 | 69.9% | 71.5% | (many diffs) |
80 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | NM_001253709.2 | 69.7% | 73.7% | (many diffs) |
81 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | NM_001253710.2 | 68.2% | 70.2% | (many diffs) |
82 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | NM_001310514.1 | 68% | 69.8% | (many diffs) |
83 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_017319663.1 | 67.8% | 71.7% | (many diffs) |
84 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501775.1 | 67.2% | 70.9% | (many diffs) |
85 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | NM_001253708.2 | 66.5% | 68.7% | (many diffs) |
86 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501778.1 | 64.9% | 67% | (many diffs) |
87 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_017319664.1 | 64.8% | 68.7% | (many diffs) |
88 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501796.2 | 63.5% | 65.3% | (many diffs) |
89 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501781.1 | 62.2% | 63.9% | (many diffs) |
90 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501782.1 | 62% | 65.6% | (many diffs) |
91 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_017319661.1 | 60.8% | 62.9% | (many diffs) |
92 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501783.1 | 59.3% | 62.9% | (many diffs) |
93 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_017319662.1 | 58.1% | 59.8% | (many diffs) |
94 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_017319666.1 | 54.8% | 56.6% | (many diffs) |
95 | mouse | 56758 | Mbnl1 | muscleblind like splicing f... | XM_006501795.1 | 50.1% | 51.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1095
- ORF length:
- 1029
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggg ccgttgctcc agggagaact gcaaatatct tcatccaccc ccacatttaa 121 aaacgcagtt ggagataaat ggacgcaata acttgattca gcagaagaac atggccatgt 181 tggcccagca aatgcaacta gccaatgcca tgatgcctgg tgccccatta caacccgtgc 241 caatgttttc agttgcacca agcttagcca ccaatgcatc agcagccgcc tttaatccct 301 atctgggacc tgtttctcca agcctggtcc cggcagagat cttgccgact gcaccaatgt 361 tggttacagg gaatccgggt gtccctgtac ctgcagctgc tgcagctgct gcacagaaat 421 taatgcgaac agacagactt gaggtatgtc gagagtacca acgtggcaat tgcaaccgag 481 gagaaaatga ttgtcggttt gctcatcctg ctgacagcac aatgattgac accaatgaca 541 acacagtcac tgtgtgtatg gattacatca aagggagatg ctctcgggaa aagtgcaaat 601 actttcatcc ccctgcacat ttgcaagcca agatcaaggc tgcccaatac caggtcaacc 661 aggctgcagc tgcacaggct gcagccaccg cagctgccat gactcagtcg gctgtcaaat 721 cactgaagcg acccctcgag gcaacctttg acctgggaat tcctcaagct gtacttcccc 781 cattaccaaa gaggcctgct cttgaaaaaa ccaacggtgc caccgcagtc tttaacactg 841 gtattttcca ataccaacag gctctagcca acatgcagtt acaacagcat acagcatttc 901 tcccaccagg ctcaatattg tgcatgacac ccgctacaag tgttgttccc atggtgcacg 961 gtgctacgcc agccactgtg tccgcagcaa caacatctgc cacaagtgtt cccttcgctg 1021 caacagccac agccaaccag atacccataa tatctgccga acatctgact agccacaagt 1081 atgttaccca gatgtnncca actttcttgt acaaagtggt tggtaagcct atccctaacc 1141 ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt 1201 cgacaatcaa cctctggatt a