Construct: ORF ccsbBroad304_10801
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002488.1_s304c1, BRDN0000408695
- Derived from:
- ccsbBroadEn_10801
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- EPB41 (2035)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_10801
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2035 | EPB41 | erythrocyte membrane protei... | NM_203342.2 | 97% | 97% | 1217_1273del |
| 2 | human | 2035 | EPB41 | erythrocyte membrane protei... | NM_001166007.2 | 96.6% | 96.6% | 1216_1217ins63 |
| 3 | human | 2035 | EPB41 | erythrocyte membrane protei... | NM_004437.4 | 94.5% | 94.5% | 1585_1586ins102 |
| 4 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000598.1 | 81.1% | 71.3% | (many diffs) |
| 5 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000602.1 | 80.6% | 75.4% | (many diffs) |
| 6 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000603.1 | 80.2% | 75.4% | (many diffs) |
| 7 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000604.1 | 80.1% | 75.2% | (many diffs) |
| 8 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000599.1 | 79.4% | 74.8% | (many diffs) |
| 9 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000600.1 | 79.3% | 74.7% | (many diffs) |
| 10 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000594.1 | 78.8% | 78.8% | 1459_1959del |
| 11 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000595.1 | 76.6% | 76.3% | (many diffs) |
| 12 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000596.1 | 76.1% | 76.1% | 1216_1217ins63;1396_1896del |
| 13 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000597.1 | 76% | 76% | 1007_1008insAGC;1213_1214ins63;1393_1893del |
| 14 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_011540964.1 | 75.6% | 75.6% | 1214_1312del;1558_2058del |
| 15 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000593.1 | 75.5% | 75.5% | 1007_1008insAGC;1211_1309del;1555_2055del |
| 16 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_005245764.1 | 74.8% | 74.8% | 1_627del |
| 17 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_005245763.1 | 73.1% | 73.1% | 1_627del;1844_1900del |
| 18 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_005245765.1 | 72.8% | 72.4% | (many diffs) |
| 19 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_005245769.1 | 72.3% | 72.3% | 1_627del;1843_1844ins63 |
| 20 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_005245770.1 | 72.2% | 72.2% | 1_627del;1634_1635insAGC;1840_1841ins63 |
| 21 | human | 2035 | EPB41 | erythrocyte membrane protei... | NM_001166005.1 | 71.9% | 71.9% | 1_627del;1841_1939del |
| 22 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_005245761.1 | 71.9% | 71.9% | 1_627del;1841_1939del |
| 23 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000586.1 | 71.7% | 71.4% | (many diffs) |
| 24 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_024453880.1 | 71.4% | 71.4% | 52_53ins105;1109_1207del;1453_1953del |
| 25 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_006710439.1 | 71% | 71% | 1_627del;1841_1939del;2185_2220del |
| 26 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_005245760.1 | 70.6% | 70.6% | 1_627del;1841_1939del;2185_2235del |
| 27 | human | 2035 | EPB41 | erythrocyte membrane protei... | NM_203343.3 | 68.1% | 68.1% | 1_627del;679_680ins105;1738_1739ins63 |
| 28 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000589.1 | 68.1% | 68.1% | 1_627del;679_680ins105;1738_1739ins63 |
| 29 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000590.1 | 67.9% | 67.9% | (many diffs) |
| 30 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_005245774.1 | 67.1% | 67.1% | 1_627del;1843_1844ins63;2022_2023ins129 |
| 31 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_005245768.1 | 67% | 67% | 1_627del;1841_1939del;2184_2185ins129 |
| 32 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_011540960.1 | 62.3% | 62.3% | 1_627del;2086_2586del |
| 33 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_011540963.2 | 61.9% | 55% | (many diffs) |
| 34 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_005245757.1 | 61.7% | 61.4% | (many diffs) |
| 35 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_005245753.1 | 61.3% | 61.3% | 1_627del;1841_1939del;2185_2634del |
| 36 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_011540959.1 | 61.1% | 61.1% | 1_627del;1844_1900del;2143_2643del |
| 37 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_011540958.1 | 61.1% | 61.1% | 1_627del;1841_1939del;2185_2646del |
| 38 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_011540961.1 | 60.7% | 60.3% | (many diffs) |
| 39 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_006710434.1 | 60.6% | 60.6% | 1_627del;1841_1939del;2185_2670del |
| 40 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_005245772.4 | 60.4% | 57% | (many diffs) |
| 41 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_011540956.1 | 60.3% | 60.3% | 1_627del;1841_1939del;2185_2685del |
| 42 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000584.2 | 60.3% | 60.3% | 1_627del;1841_1939del;2185_2685del |
| 43 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000587.1 | 60.3% | 56.8% | (many diffs) |
| 44 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000591.1 | 60.3% | 56.7% | (many diffs) |
| 45 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_005245773.4 | 60.2% | 56.8% | (many diffs) |
| 46 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_011540957.1 | 60.2% | 60.2% | (many diffs) |
| 47 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_011540962.1 | 60.2% | 60.2% | 1_627del;1843_1844ins63;2023_2523del |
| 48 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000585.2 | 60.2% | 60.2% | 1_627del;1843_1844ins63;2023_2523del |
| 49 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000588.1 | 60.1% | 56.7% | (many diffs) |
| 50 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000592.1 | 60.1% | 56.6% | (many diffs) |
| 51 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_011540965.3 | 60.1% | 56.6% | (many diffs) |
| 52 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000583.1 | 60.1% | 60.1% | (many diffs) |
| 53 | human | 2035 | EPB41 | erythrocyte membrane protei... | NM_001166006.1 | 57.6% | 57.2% | (many diffs) |
| 54 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000581.1 | 56.9% | 56.9% | (many diffs) |
| 55 | human | 2035 | EPB41 | erythrocyte membrane protei... | XM_017000582.1 | 56.8% | 56.8% | (many diffs) |
| 56 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_017320241.1 | 88.2% | 93.7% | (many diffs) |
| 57 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538910.3 | 86.3% | 91.6% | (many diffs) |
| 58 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538909.3 | 85.6% | 90.9% | (many diffs) |
| 59 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | NM_001128607.1 | 84.9% | 90.3% | (many diffs) |
| 60 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538912.3 | 84.8% | 90.3% | (many diffs) |
| 61 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538908.3 | 83.8% | 89% | (many diffs) |
| 62 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_017320237.1 | 71.3% | 75.5% | (many diffs) |
| 63 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538899.3 | 69.7% | 73.8% | (many diffs) |
| 64 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538900.3 | 69.6% | 73.8% | (many diffs) |
| 65 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538916.3 | 69.2% | 66.8% | (many diffs) |
| 66 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538913.3 | 68.8% | 69.9% | (many diffs) |
| 67 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538915.3 | 68.7% | 69.7% | (many diffs) |
| 68 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_017320238.1 | 68.6% | 72.7% | (many diffs) |
| 69 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538897.3 | 68.3% | 72.4% | (many diffs) |
| 70 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538896.3 | 68.1% | 72.1% | (many diffs) |
| 71 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538895.3 | 67.3% | 71.3% | (many diffs) |
| 72 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538901.3 | 67.1% | 71.2% | (many diffs) |
| 73 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538902.3 | 67% | 71.2% | (many diffs) |
| 74 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538893.3 | 66.9% | 70.9% | (many diffs) |
| 75 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538894.3 | 66.8% | 70.9% | (many diffs) |
| 76 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | NM_001128606.1 | 63.5% | 67.5% | (many diffs) |
| 77 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | NM_183428.3 | 63.5% | 67.3% | (many diffs) |
| 78 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_017320243.1 | 63.4% | 67.5% | (many diffs) |
| 79 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538917.3 | 62.8% | 66.6% | (many diffs) |
| 80 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538911.3 | 55.2% | 58.7% | (many diffs) |
| 81 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_017320239.1 | 54.1% | 57.2% | (many diffs) |
| 82 | mouse | 269587 | Epb41 | erythrocyte membrane protei... | XM_006538907.3 | 53.3% | 56.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1935
- ORF length:
- 1866
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gcactgcaag gtttctttgt tggatgacac agtttatgaa tgtgttgtgg 121 agaaacatgc taagggacaa gatttgctta aacgagtatg tgagcatctc aatcttttgg 181 aagaagacta ttttggtcta gccatttggg ataacgcaac ctctaagaca tggctggatt 241 ccgccaaaga aataaaaaag caggttcgtg gtgtcccttg gaattttaca tttaatgtaa 301 agttttatcc acctgaccca gcacagttaa cagaagacat aacaagatat tatttatgtc 361 ttcagcttcg gcaggacata gttgcaggac gtctgccctg ttcctttgca accttagcat 421 tattaggttc ttacaccatc cagtctgaac tgggagacta cgacccagaa ctccatggcg 481 tggattatgt tagtgatttt aaactggccc cgaatcagac caaggaactt gaagagaagg 541 tcatggaact gcataagtca tacaggtcca tgactccagc tcaggctgac ttggagtttc 601 ttgagaatgc caaaaagttg tctatgtatg gagttgatct tcataaagca aaggacttgg 661 aaggagtaga tatcatccta ggtgtctgct ctagtggcct tctggtttac aaagataagc 721 tgagaattaa ccgcttccct tggcccaaag tgctgaagat ttcttataaa cgtagtagct 781 ttttcatcaa gattcggcct ggagagcaag agcagtatga aagtaccatc ggattcaaac 841 ttcccagtta ccgagcagct aagaaattat ggaaagtctg tgtagaacat cacacgtttt 901 tcagattgac atctacagac accattccca aaagcaaatt tcttgcgcta ggatccaaat 961 ttcgatacag tggccggact caagctcaga ccaggcaagc tagtgctcta attgacaggc 1021 ctgccccaca cttcgagcgt acagcaagta aacgggcgtc ccggagcctc gatggagcag 1081 cagctgtcga ttcggcagac cgaagtcctc ggcccacttc tgcacctgcc attactcagg 1141 gtcaggttgc agaaggtggc gtcctagatg cctctgctaa aaaaacagtg gtccctaaag 1201 cacagaagga aacagtgaag gctgaagtga aaaaggaaga cgagccacct gagcaagctg 1261 agccagagcc cacagaagca tggaagaaaa agagagaaag actagatggt gaaaacattt 1321 atatcagaca tagcaattta atgttggagg atttagacaa gagtcaagag gagatcaaaa 1381 aacatcatgc cagcatcagt gagctgaaaa agaacttcat ggagtctgta ccagaaccac 1441 ggcctagtga atgggataaa cgcttatcca ctcactcacc cttccgaact cttaacatca 1501 atgggcaaat ccccacagga gaaggacctc ccctggtgaa gacacaaact gtcaccatct 1561 cagataatgc caatgctgtg aaaagtgaaa tcccaaccaa agacgtccct attgtccaca 1621 ctgagaccaa gaccatcact tatgaggctg cccagactga cgacaacagt ggagacttgg 1681 acccaggagt cttgctgaca gctcaaacta tcacatctga gaccccaagc agcaccacca 1741 caactcaaat taccaagact gtaaaaggtg ggatttcaga gacacgtatt gaaaagagaa 1801 ttgtgatcac aggagatgct gatattgacc atgatcaggt ccttgtacaa gccatcaagg 1861 aggcaaagga gcagcaccca gacatgtcag tgaccaaggt ggtcgtccac caggagaccg 1921 agattgctga tgagttgcca actttcttgt acaaagtggt tggtaagcct atccctaacc 1981 ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt 2041 cgacaatcaa cctctggatt a