Toggle navigation
CRC immune hubs
Nav
CRC-SC-Portal
Gene programs
T/NK/ILC cell programs (pTNKI)
B cell programs (pB)
Plasma cell programs (pP)
Mast cell programs (pMA)
Myeloid cell programs (pM)
Stromal cell programs (pS)
Global epithelial programs (pEpi)
MMRd epithelial programs (pEpiTd)
MMRp epithelial programs (pEpiTp)
CRC immune hubs
Overview
T cell programs
pTNI overview
pTNI01 (Fos, Jun)
pTNI02 (Treg)
pTNI03 (prolif)
pTNI04
pTNI05
pTNI06 (MHCII, IFNg)
pTNI07 (proteasome, ER)
pTNI08 (innate T)
pTNI09 (Translation)
pTNI10
pTNI11
pTNI12
pTNI13 (prolif)
pTNI14 (gd-like T)
pTNI15 (HSPs)
pTNI16 (cytotoxicity)
pTNI17
pTNI18 (CXCL13 T)
pTNI19 (ISGs)
pTNI20 (GZMK)
pTNI21 (KLRB1)
B cell programs
pB overview
pB01
pB02 (Fos, Jun)
pB03
pB04
pB05
pB06
pB07 (prolif)
pB08
pB09
pB10
pB11 (glycolysis)
pB12
pB13 (prolif)
pB14
Plasma cell programs
pP overview
pP01
pP02
pP03 (FOS/JUN)
pP04 (MHC)
pP05
pP06
pP07 (HSPs)
pP08 (Ribosomal proteins)
pP09 (ISG)
pP10 (Prolif)
pP11
Mast cell programs
pMA overview
pMA01 (Fos/Jun)
pMA02 (MHC/ISG)
pMA03
pMA04 (Prolif)
pMA05
pMA06 (mast lineage enzymes)
pMA07 (RPL genes)
Myeloid cell programs
pM overview
pM01 (SEPP1, LYVE1)
pM02 (MMPs)
pM03 (glycolysis)
pM04 (Fos, Jun)
pM05 (C1Q)
pM06 (APOE)
pM07 (pDC)
pM08 (proteasome, protein folding)
pM09
pM10 (CCL2, SPP1)
pM11 (mregDC)
pM12 (HSPs)
pM13
pM14 (VEGFA)
pM15 (Granulo)
pM16 (S100)
pM17
pM18 (prolif)
pM19
pM20 (inflammatory)
pM21 (ISGs)
pM22 (DC, MHCII)
Stromal cell programs
pS overview
pS01 (Smooth Muscle)
pS02 (Fibro matrix/ stem cell niche)
pS03 (ACTA2)
pS04
pS05 (ISGs)
pS06
pS07
pS08 (Collagens)
pS09
pS10 (angiogenesis)
pS11 (Fibro CCL8)
pS12 (prolif)
pS13 (inflammatory)
pS14
pS15 (Perictye)
pS16 (Metallothionein)
pS17 (Fibro BMP-producing)
pS18 (Endo art)
pS19 (Endo cap)
pS20
pS21 (Fos, Jun)
pS22 (Schwann)
pS23 (Endo lymph)
pS24 (Endo ven)
pS25
MMRd epithelial programs
pEpiTd overview
pEpiTd01 (Fos, Jun)
pEpiTd02 (MUC13)
pEpiTd03
pEpiTd04
pEpiTd05 (Metallothionein)
pEpiTd06
pEpiTd07 (Reg family genes)
pEpiTd08
pEpiTd09
pEpiTd10 (G2 phase)
pEpiTd11 (sterol biosynthesis)
pEpiTd12
pEpiTd13 (glycolysis)
pEpiTd14 (Tuft-like)
pEpiTd15 (SPINK4)
pEpiTd16 (M phase)
pEpiTd17 (inflammatory chemokines)
pEpiTd18
pEpiTd19 (MHCII, ISGs)
pEpiTd20
pEpiTd21 (TFF1, S100P)
pEpiTd22 (KRT18, actin)
pEpiTd23
pEpiTd24
pEpiTd25
pEpiTd26 (mitochondrial genes, MUC4)
pEpiTd27
pEpiTd28 (Elongation factors)
pEpiTd29 (XBP1)
MMRp epithelial programs
pEpiTp overview
pEpiTp01 (ARID3A, TSPAN6, PRDX5, ROMO1)
pEpiTp02 (metallothionein)
pEpiTp03
pEpiTp04 (S/G2/M phase)
pEpiTp05
pEpiTp06
pEpiTp07
pEpiTp08 (TFF3)
pEpiTp09
pEpiTp10
pEpiTp11
pEpiTp12
pEpiTp13
pEpiTp14
pEpiTp15 (B2M, MHCI)
pEpiTp16 (Elongation factors)
pEpiTp17
pEpiTp18 (G2 phase)
pEpiTp19 (HSPA1A, CD46)
pEpiTp20
pEpiTp21 (ISGs)
pEpiTp22 (KRT8, actin)
pEpiTp23 (POLR1D)
pEpiTp24 (Tuft-like)
pEpiTp25 (Fos, Jun)
pEpiTp26 (glycolysis)
pEpiTp27
pEpiTp28 (SPINK4, XBP1)
pEpiTp29 (SEPP1, SLC26A3)
pEpiTp30 (SLC26A2)
pEpiTp31 (CKB)
pEpiTp32
Global epithelial programs
pEpi overview
pEpi01 (MUC13)
pEpi02 (ribosomal genes)
pEpi03 (Fos, Jun)
pEpi04 (sterol biosynthesis)
pEpi05 (TGFBI, HSPA1A, CD46)
pEpi06 (inflammatory chemokines)
pEpi07
pEpi08
pEpi09 (metallothionein)
pEpi10
pEpi11
pEpi12 (POLR1D, SAP18, PDCD5)
pEpi13 (glycolysis)
pEpi14 (Reg family genes)
pEpi15 (SLPI)
pEpi16 (SLC26A2)
pEpi17 (TFF1, S100P)
pEpi18 (Tuft-like)
pEpi19
pEpi20 (G2 phase)
pEpi21 (S phase)
pEpi22 (ARID3A, TSPAN6)
pEpi23
pEpi24 (GPX2, PRDX5, ROMO1)
pEpi25 (ribosomal genes)
pEpi26
pEpi27
pEpi28
pEpi29 (REG4, AGR2, AGR3)
pEpi30 (ISGs)
pEpi31
pEpi32 (G2/M phase)
pEpi33
pEpi34 (MHCII, ISGs)
pEpi35 (CLCA1, TFF3, SPINK1)
pEpi36 (KRT8/KRT18, actin)
pEpi37 (mitochondrial genes)
pEpi38
pEpi39 (SEPP1, SLC26A3)
pEpi40 (CKB, AOC1, CEACAM6)
pEpi41 (GSN, MUC2, MUC4)
pEpi42 (elongation factors)
pEpi43 (SPINK4, XBP1)
B overview
Overview of B cells subtypes
tSNE visualization of B cell subtypes and states
Gene program activation in B cell subtypes
Violin plots showing activation of gene programs in different B cell subtypes
ccNMF gene programs in B cells (pB):
pB01
pB02 (Fos, Jun)
pB03
pB04
pB05
pB06
pB07 (prolif)
pB08
pB09
pB10
pB11 (glycolysis)
pB12
pB13 (prolif)
pB14