Overview of Epithelial cells subtypes
tSNE visualization of Epithelial cell subtypes and states
Gene program activation in Epithelial cell subtypes
Violin plots showing activation of gene programs in different Epithelial cell subtypes
ccNMF gene programs in Epithelial cells (pEpi):
- pEpi01 (MUC13)
- pEpi02 (ribosomal genes)
- pEpi03 (Fos, Jun)
- pEpi04 (sterol biosynthesis)
- pEpi05 (TGFBI, HSPA1A, CD46)
- pEpi06 (inflammatory chemokines)
- pEpi07
- pEpi08
- pEpi09 (metallothionein)
- pEpi10
- pEpi11
- pEpi12 (POLR1D, SAP18, PDCD5)
- pEpi13 (glycolysis)
- pEpi14 (Reg family genes)
- pEpi15 (SLPI)
- pEpi16 (SLC26A2)
- pEpi17 (TFF1, S100P)
- pEpi18 (Tuft-like)
- pEpi19
- pEpi20 (G2 phase)
- pEpi21 (S phase)
- pEpi22 (ARID3A, TSPAN6)
- pEpi23
- pEpi24 (GPX2, PRDX5, ROMO1)
- pEpi25 (ribosomal genes)
- pEpi26
- pEpi27
- pEpi28
- pEpi29 (REG4, AGR2, AGR3)
- pEpi30 (ISGs)
- pEpi31
- pEpi32 (G2/M phase)
- pEpi33
- pEpi34 (MHCII, ISGs)
- pEpi35 (CLCA1, TFF3, SPINK1)
- pEpi36 (KRT8/KRT18, actin)
- pEpi37 (mitochondrial genes)
- pEpi38
- pEpi39 (SEPP1, SLC26A3)
- pEpi40 (CKB, AOC1, CEACAM6)
- pEpi41 (GSN, MUC2, MUC4)
- pEpi42 (elongation factors)
- pEpi43 (SPINK4, XBP1)